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Detailed information on CNT30612607


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SYW8|LHCA2_ARATH, E-value = 8e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Arabis alpinaOryza sativa22.6348.2283.61122forward
CNT30520455Arabis alpinaSetaria italica29.3129.781.01158forward
CNT30282763Arabis alpinaChenopodium quinoa42.4928.7783.84229forward
CNT30708688Arabis alpinaGlycine max30.9846.0180.24167forward
CNT30221764Arabis alpinaHordeum vulgare23.7544.9183.59128forward
CNT30386161Arabis alpinaTriticum turgidum29.3125.9981.65158forward
CNT30436586Arabis alpinaAegilops tauschii29.3168.782.28158forward
CNT30244600Arabis alpinaAvena sativa32.2874.0482.76174forward
CNT30659042Arabis alpinaTriticum dicoccoides34.8864.1681.38188forward
CNT30132533Arabis alpinaLolium perenne32.2870.1682.18174forward
CNT3013862Arabis alpinaZea mays38.7829.9479.43209forward
CNT30651400Arabis alpinaRosa chinensis26.1629.0785.82141forward
CNT30126375Arabis alpinaCorymbia citriodora17.0728.1386.9692forward
CNT30681050Arabis alpinaTriticum urartu29.3167.5281.65158forward
CNT30477381Arabis alpinaArabidopsis halleri52.6995.6292.96284forward
CNT30619887Arabis alpinaCajanus cajan20.9643.6387.61113forward
CNT3053136Arabis alpinaAmborella trichopoda47.8758.6480.23258forward
CNT30329735Arabis alpinaDioscorea rotundata22.6337.8985.25122forward
CNT30581231Arabis alpinaEchinochloa crusgalli29.3173.1581.65158forward
CNT30556637Arabis alpinaPanicum hallii27.0966.6781.51146forward
CNT30725037Arabis alpinaLupinus angustifolius61.9738.9779.94334forward
CNT3050430Arabis alpinaCucumis sativus20.9631.8385.84113forward

Expression of CNT30612607

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MISAHLRPSAHPIKMSSTTKSVVLSVKYSCSPAVYHDGVLRIPIFVRNSGMNIPAAPSIAHRQ*

>peptide 2 (47 aa)
SEDSGVTGISKMCKKIINRTSSSVDMLEPSTHHCQHSQPSILDLFSS*

Sequence

>CNT30612607
AGCGAAGATAGTGGCGTGACCGGGATCAGCAAGATGTGCAAAAAGATTATCAATAGGACCAGTTCCAGTGTAGATATGTTGGAACCAAGCACCCATCACT
GCCAACATAGCCAACCTTCCATTCTTGATCTCTTTAGTTCTTAACTCCTTCAGCTTAGCCGGGCTAGCGGATCCCCAACCCAACGGGTCAAACCATAACC
CACCCGGGTAACCAACATCTGTACCGGTAAGCTTGTTGTTTGGGAAGACTGGATCAGTGTTGACACTACCGGGTTTAATGATATCGGCCCATCTACGTCC
TTCCGCCCATCCGATCAAGATGAGTTCAACGACAAAGAGTGTGGTTTTGTCCGTGAAGTACTCTTGTTCTCCGGCCGTGTACCACGATGGAGTGTTGAGG
ATTCCGATCTTTGTCAGGAACTCTGGGATGAATATCCCGGCGGCTCCTAGCATTGCCCATCGACAGTGAACTAGCTCTGCTTGTACGTTCCATTTTAGAC
TGTCCGGGTCAGATGCTGCCATATGTGTCCTACTTTTGT