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Detailed information on CNT30329735


BLAST search results

BLAST vs Swiss-Prot:
sp|P13869|CB12_PETHY, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282763Dioscorea rotundataChenopodium quinoa42.2417.0982.35136forward
CNT30708597Dioscorea rotundataGlycine max27.6417.885.3989forward
CNT3044098Dioscorea rotundataPrunus dulcis48.7630.0284.71157forward
CNT30612607Dioscorea rotundataArabis alpina37.8922.6385.25122forward
CNT30651400Dioscorea rotundataRosa chinensis51.8634.4383.23167forward
CNT30126375Dioscorea rotundataCorymbia citriodora5049.2481.99161forward
CNT30619887Dioscorea rotundataCajanus cajan44.4155.2185.31143forward
CNT3053136Dioscorea rotundataAmborella trichopoda42.2430.9187.5136forward

Expression of CNT30329735

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MTRVCKMSKKVINWSSASVDCLEPCTHHCQHCKSPILDLLSSQLLDFLRRASPPSKRIEPQASQMQLQIL*

>peptide 2 (37 aa)
HDQGLQDEQKGYQLVQCQCRLPGTMHPSLPTLQVSHS*

Sequence

>CNT30329735
CATGACCAGGGTCTGCAAGATGAGCAAAAAGGTTATCAATTGGTCCAGTGCCAGTGTAGATTGCCTGGAACCATGCACCCATCACTGCCAACATTGCAAG
TCTCCCATTCTTGATCTCCTTAGTTCTCAGCTCCTTGATTTTCTCAGGAGAGCCAGTCCCCCATCCAAGAGGATCGAACCACAGGCCTCTCAGATGCAAC
TGCAGATACTGTAACTGCTCGGCGGCTAGTAGGTGCAACCCACTTTCCTTGTCTCAATCTTTTCCCTCCAAGGAATGATGCCCTTAGTCCCACCCAAGTT
CAACCCATTCTTCTGAGAACTG