« Back to Chenopodium quinoa search


Detailed information on CNT30282763


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SYW8|LHCA2_ARATH, E-value = 7e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727388Chenopodium quinoaCorchorus capsularis8.4220.5588.0667forward
CNT30197165Chenopodium quinoaPisum sativum19.475082.58155forward
CNT30708688Chenopodium quinoaGlycine max12.9428.3787.38103forward
CNT3044098Chenopodium quinoaPrunus dulcis26.5140.3486.73211forward
CNT30385452Chenopodium quinoaTriticum turgidum14.3250.4484.21114forward
CNT30612607Chenopodium quinoaArabis alpina28.7742.4983.84229forward
CNT30651400Chenopodium quinoaRosa chinensis30.5350.185.19243forward
CNT30126375Chenopodium quinoaCorymbia citriodora24.7560.2484.26197forward
CNT30681050Chenopodium quinoaTriticum urartu9.5532.4884.2176forward
CNT30619887Chenopodium quinoaCajanus cajan26.8882.6384.11214forward
CNT3053136Chenopodium quinoaAmborella trichopoda17.8432.2785.92142forward
CNT30329735Chenopodium quinoaDioscorea rotundata17.0942.2482.35136forward
CNT30580716Chenopodium quinoaEchinochloa crusgalli16.0849.0483.59128forward
CNT30556637Chenopodium quinoaPanicum hallii16.0858.4584.38128forward
CNT3050430Chenopodium quinoaCucumis sativus26.2658.8782.78209forward

Expression of CNT30282763

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MPILVRNSGMKIPAAPNIAHLQCTSSDCT

>peptide 2 (98 aa)
MARISKVGKEVINWASPSVNVLEPSTHNSQHSQPSILNLLSPQLLNLLRRARTPAQWVKPKPSGVSNIGTGELVVGEDWGGGVCEVLEFTSSVPRRCV*

Sequence

>CNT30282763
GTGTGATCAAACACATAAACTATAGAAGAACTATGTATTCTAAAATTAACGTGTGCGATTAATGAATCAACATAATTATCCTTCACTAAGTACGTACTGA
AAATAATACATATCATATACTAATGTTATCTATTTAAAACTTCTTAGTGAGGAGTATCATAAAGAGTTATATACTTATATGGAGATACATCATGTTAAAA
CTTTTTAATATAATAAAATGTCGACGTGCTTTATGGCTTGCTTAGAACTTTTAGGTTTAACTTACATAAAATGTAGAAAGTGTGTATAACCTATCAATTA
AGGACGGATGAAGTAAATGTTTTTAATGATTGAAGTTCTTATTCCGCATTTTCCAATATAAATGAGTAAATAGATGAAATAAAAAAATACTTACAGCAAA
AATTGTGGCATGGCCAGGATCAGCAAGGTGGGCAAAGAGGTTATCAATTGGGCCAGTCCCAGTGTAAATGTGTTGGAACCAAGCACCCATAACAGCCAAC
ATAGCCAACCTTCCATTCTTAATCTCCTTAGTCCTCAACTCCTTAACCTTTTGAGGCGAGCCCGAACCCCAGCCCAATGGGTCAAACCAAAGCCCTCCGG
GGTATCCAACATCGGTACCGGTGAGCTTGTTGTTGGGGAAGATTGGGGTGGTGGTGTCTGTGAAGTACTCGAGTTCACCAGCAGTGTACCAAGAAGGTGT
GTTTAGGATGCCAATTTTGGTTAGGAATTCTGGGATGAAAATTCCAGCTGCTCCTAACATAGCCCATCTACAATGTACTAGTTCTGATTGTACCAT