Detailed information on CNT30695011


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SYW8|LHCA2_ARATH, E-value = 6e-39

BLAST vs NONCODE:
NONBNAT006615, E-value = 5e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672141Oryza sativaSetaria viridis83.7929.9988.68212forward
CNT30520455Oryza sativaSetaria italica78.2637.2296.46198forward
CNT30288773Oryza sativaTriticum aestivum34.7833.5994.3288forward
CNT30221764Oryza sativaHordeum vulgare61.6654.7494.87156forward
CNT30386161Oryza sativaTriticum turgidum75.131.2595.79190forward
CNT30436586Oryza sativaAegilops tauschii77.8785.6596.45197forward
CNT30244600Oryza sativaAvena sativa81.0387.2394.63205forward
CNT30659042Oryza sativaTriticum dicoccoides81.8270.6596.62207forward
CNT30612607Oryza sativaArabis alpina48.2222.6383.61122forward
CNT30131664Oryza sativaLolium perenne100104.1290.91253forward
CNT3013862Oryza sativaZea mays52.5719.0595.49133forward
CNT30681359Oryza sativaTriticum urartu78.6627.695.48199forward
CNT30339489Oryza sativaEragrostis tef56.138.3583.1142forward
CNT30477381Oryza sativaArabidopsis halleri45.0638.3882.46114forward
CNT30370710Oryza sativaOryza glumipatula51.7833.1699.24131forward
CNT3053136Oryza sativaAmborella trichopoda56.5232.583.22143forward
CNT3038710Oryza sativaCucumis melo60.0847.881.58152forward
CNT30580975Oryza sativaEchinochloa crusgalli78.2682.8596.46198forward
CNT30117266Oryza sativaOryza nivara54.9438.5100139forward
CNT30556637Oryza sativaPanicum hallii70.3681.2896.07178forward
CNT30725037Oryza sativaLupinus angustifolius50.5914.9480.47128forward

Expression of CNT30695011

Peptides detected in this lncRNA

>peptide 1 (83 aa)
PDVGAGELVVGEDGVADEDELDDEEGGGVGEVLLLAGGVPRRRVEDADLGQELRDEDARRAQHRPPAVHQLRLHVPPQALRVRS

>peptide 2 (82 aa)
PTSVPVSLLLGKMGSPMRMSSMMKRVVVSVKYCCSPAVYHDGVLRMPILVRNSGMKMPAAPSIAHRQCTSSACTFHRKLSGSD

Sequence

>CNT30695011
ACCCGACGTCGGTGCCGGTGAGCTTGTTGTTGGGGAAGATGGGGTCGCCGATGAGGATGAGCTCGATGATGAAGAGGGTGGTGGTGTCGGTGAAGTATTG
CTGCTCGCCGGCGGTGTACCACGACGGCGTGTTGAGGATGCCGATCTTGGTCAGGAACTCCGGGATGAAGATGCCCGCCGCGCCCAGCATCGCCCACCGG
CAGTGCACCAGCTCCGCCTGCACGTTCCACCGCAAGCTCTCCGGGTCCGATCC