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Detailed information on CNT3038710


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Cucumis meloOryza sativa47.860.0881.58152forward
CNT30708754Cucumis meloGlycine max54.0928.9683.14172forward
CNT30221764Cucumis meloHordeum vulgare30.8234.3983.6798forward
CNT30386161Cucumis meloTriticum turgidum51.5726.9780.49164forward
CNT30436586Cucumis meloAegilops tauschii51.5771.381.1164forward
CNT30244600Cucumis meloAvena sativa51.5769.7979.88164forward
CNT30659042Cucumis meloTriticum dicoccoides58.1863.1481.62185forward
CNT30132533Cucumis meloLolium perenne44.0356.4580.71140forward
CNT30681359Cucumis meloTriticum urartu51.5722.7580.49164forward
CNT30370710Cucumis meloOryza glumipatula31.7625.5782.18101forward
CNT3053136Cucumis meloAmborella trichopoda21.715.6885.5169forward
CNT30117266Cucumis meloOryza nivara40.2535.4681.25128forward
CNT30725037Cucumis meloLupinus angustifolius57.5521.3581.42183forward

Expression of CNT3038710

Peptides detected in this lncRNA

>peptide 1 (87 aa)
HRLPSAQPMKMSSTMNRVVVSVKYSNSPAEYHEGVFNIPIFVKNSGMKIPAAPNIAHRQCTSSACWSIGIGCGAYRSGSRSNDSSSI*

Sequence

>CNT3038710
CCACCGTCTACCCTCGGCCCAACCGATGAAAATGAGTTCCACTATGAATAGAGTGGTGGTGTCGGTGAAATATTCCAATTCACCGGCGGAGTACCACGAA
GGAGTGTTCAATATACCGATCTTTGTCAAGAATTCCGGGATGAAAATTCCTGCTGCCCCCAACATTGCCCATCGGCAGTGTACGAGCTCCGCCTGTTGGT
CTATCGGGATCGGCTGCGGCGCATACCGGAGCGGATCGAGGAGCAACGACAGCAGCAGCATTTAAGTTTCTCAGCCTAAGCTTCTTGCCAGCAAGGAAGT
TAGAAGCCAGCTTGGGGC