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Detailed information on CNT3050369


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08451|PIP1_SOLLC, E-value = 9e-57

BLAST vs NONCODE:
NONGMAT001758, E-value = 2e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Cucumis sativusOryza sativa44.3526.9283200forward
CNT30670956Cucumis sativusSetaria viridis54.3221.9780245forward
CNT30523825Cucumis sativusSetaria italica20.429.1183.792forward
CNT30640424Cucumis sativusNymphaea colorata28.1615.2884.25127forward
CNT30316259Cucumis sativusCorylus avellana49.2269.5982.43222forward
CNT30517210Cucumis sativusJuglans regia31.9322.481.25144forward
CNT30728342Cucumis sativusCorchorus capsularis49.6733.9483.93224forward
CNT30298239Cucumis sativusTriticum aestivum56.3237.6379.92254forward
CNT30221117Cucumis sativusHordeum vulgare22.6246.3686.27102forward
CNT30393291Cucumis sativusTriticum turgidum56.3218.9379.92254forward
CNT30560771Cucumis sativusActinidia chinensis49.4529.384.75223forward
CNT30592144Cucumis sativusMusa acuminata13.0825.6588.1459forward
CNT30541063Cucumis sativusBrassica napus50.3328.5982.82227forward
CNT30234760Cucumis sativusBrassica oleracea30.645.2583.33138forward
CNT30437220Cucumis sativusAegilops tauschii31.2624.6584.4141forward
CNT30658043Cucumis sativusTriticum dicoccoides14.6324.0990.9166forward
CNT30131632Cucumis sativusLolium perenne38.1478.5480.81172forward
CNT30646773Cucumis sativusRosa chinensis47.0157.4584.43212forward
CNT30211930Cucumis sativusHelianthus annuus42.7958.3179.27193forward
CNT30680472Cucumis sativusTriticum urartu31.2620.2385.11141forward
CNT30366377Cucumis sativusSorghum bicolor56.9851.7180.93257forward
CNT30595794Cucumis sativusOryza meridionalis44.3591.3279200forward
CNT30118191Cucumis sativusCitrus clementina23.2810.1184.76105forward
CNT30575194Cucumis sativusOryza barthii29.7165.3784.33134forward
CNT30115961Cucumis sativusOryza nivara44.3518.2883200forward
CNT30603734Cucumis sativusOryza punctata47.2316.2281.22213forward

Expression of CNT3050369

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTSARPARTVAPAVALCSPCPSAPMCQLAAFLRTCLLLASRPLLSPPFSYSSSLLSFA*

>peptide 2 (68 aa)
GISLSIGGGEDGVDENEDHAAEGPSNALNADAVAFGRRSVDSHHRQDGDVEEQESGHKLRDSGSVKRP*

Sequence

>CNT3050369
GGCATTTCTCTTAGCATCGGTGGCGGAGAAGACGGTGTAGACGAGAACGAAGATCATGCCGCCGAAGGCCCAAGCAATGCCCTGAATGCCGACGCTGTTG
CATTTGGACGGAGATCGGTTGACTCCCATCACCGTCAAGATGGTGATGTAGAGGAACAAGAAAGTGGCCATAAACTCCGCGATTCCGGCTCTGTAAAACG
ACCATGACTTCAGCTCGCCCGGCTCGTACAGTGGCGCCGGCGGTGGCTCTTTGTAGTCCTTGTCCGTCTGCGCCGATGTGCCAATTGGCTGCCTTTCTGA
GAACTTGTTTGCTCCTAGCTTCACGTCCTCTTCTTTCCCCTCCATTTTCTTATTCTTCTTCTTTGCTGAGTTTTGCTTAGAAAATGTAACAAGGGAGGTT
CTCTTCTCTCACTCTAGAATGAGATTTCTCTCTCCTGTTAATGGGGTTTTG