Detailed information on CNT30646773


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06611|PIP12_ARATH, E-value = 3e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640424Rosa chinensisNymphaea colorata33.0614.6883.61122forward
CNT30316259Rosa chinensisCorylus avellana57.4566.4684.43212forward
CNT30549105Rosa chinensisIpomoea triloba38.4824.9688.03142forward
CNT30515171Rosa chinensisJuglans regia59.8923.4179.64221forward
CNT3020673Rosa chinensisCitrullus lanatus34.9612.1481.4129forward
CNT30728342Rosa chinensisCorchorus capsularis57.4532.1285.85212forward
CNT30560771Rosa chinensisActinidia chinensis57.4527.8683.96212forward
CNT30590202Rosa chinensisMusa acuminata55.5622.6881.95205forward
CNT30541063Rosa chinensisBrassica napus36.3116.8888.06134forward
CNT30234760Rosa chinensisBrassica oleracea31.7138.3681.2117forward
CNT30658043Rosa chinensisTriticum dicoccoides17.6223.7286.1565forward
CNT30609232Rosa chinensisGossypium raimondii21.9515.2587.6581forward
CNT30227661Rosa chinensisAnanas comosus14.0922.8196.1552forward
CNT30211930Rosa chinensisHelianthus annuus46.8852.2784.39173forward
CNT30712987Rosa chinensisMalus domestica golden21.4122.1386.0879forward
CNT30573330Rosa chinensisVitis vinifera27.3733.1190.1101forward
CNT30706529Rosa chinensisPrunus avium59.8914.3781.45221forward
CNT30118191Rosa chinensisCitrus clementina33.611.9387.1124forward
CNT3038888Rosa chinensisCucumis melo34.6912.3781.25128forward
CNT3050369Rosa chinensisCucumis sativus57.4547.0184.43212forward

Expression of CNT30646773

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTGAHQAQTVELVVAPCSPCQSELRSLWAASLRTCWLPTSHPLLSPP*

>peptide 2 (29 aa)
MGCLSENLLAPNFTSSSFPSMKSAFFFSL*

Sequence

>CNT30646773
GGCAGCTCCAAGGCTCCTAGCAGGGTTGATACCAGTTCCAGTGATGGGGATGTCAAAATAGTGATGTAGAGGAACAAGAAGGTAGCCACAAACTCAGCTA
TTCCAGCTCTCCAAAAAGACCATGACTGGAGCTCACCAGGCTCAAACAGTGGAGCTGGTGGTGGCTCCTTGTAGTCCTTGTCAGTCTGAGCTGAGGTCCC
TATGGGCTGCCTCTCTGAGAACTTGTTGGCTCCCAACTTCACATCCTCTTCTTTCCCCTCCATGAAGTCTGCTTTCTTTTTCTCTCTCTGAAACTCTGGT
TTTGGGGTTCTGGGTGCTTCTCTCTTCTCACTCTAGAAAGCTCAAAGCTTTGGTTTTTGGGGAGTAAGC