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Detailed information on CNT30118191


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06611|PIP12_ARATH, E-value = 5e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640314Citrus clementinaNymphaea colorata7.0321.690.4173forward
CNT30316259Citrus clementinaCorylus avellana12.1339.588.1126forward
CNT30549116Citrus clementinaIpomoea triloba10.337.6889.72107forward
CNT30517286Citrus clementinaJuglans regia11.7422.6382.79122forward
CNT30375144Citrus clementinaArabidopsis thaliana11.5529.6383.33120forward
CNT3019525Citrus clementinaCitrullus lanatus6.3530.1489.3966forward
CNT30728342Citrus clementinaCorchorus capsularis16.1725.4583.93168forward
CNT30504332Citrus clementinaNicotiana attenuata9.0527.4185.1194forward
CNT30709876Citrus clementinaGlycine max8.8525.7790.2292forward
CNT30163276Citrus clementinaPistacia vera9.9133.4488.35103forward
CNT3095762Citrus clementinaSolanum tuberosum23.113.3283.75240forward
CNT30560769Citrus clementinaActinidia chinensis15.1123.4383.44157forward
CNT30590280Citrus clementinaMusa acuminata10.8821.7784.96113forward
CNT3085870Citrus clementinaVigna radiata8.4720.0587.588forward
CNT30552699Citrus clementinaOryza glaberrima8.5722.6585.3989forward
CNT30659451Citrus clementinaTriticum dicoccoides8.4724.5184.0988forward
CNT30261241Citrus clementinaBrassica rapa8.5724.4589.8989forward
CNT30613102Citrus clementinaArabis alpina9.4337.6986.7398forward
CNT30227661Citrus clementinaAnanas comosus9.9145.1892.23103forward
CNT30646773Citrus clementinaRosa chinensis11.9333.687.1124forward
CNT30211930Citrus clementinaHelianthus annuus12.1338.0788.89126forward
CNT30712987Citrus clementinaMalus domestica golden7.5121.8585.978forward
CNT30595656Citrus clementinaOryza meridionalis7.2222.469275forward
CNT30644102Citrus clementinaCannabis sativa23.255.485.48241forward
CNT3024497Citrus clementinaPopulus trichocarpa18.2967.6281.58190forward
CNT30319296Citrus clementinaAsparagus officinalis22.8153.581.86237forward
CNT3065055Citrus clementinaSelaginella moellendorffii11.1631.4487.07116forward
CNT3050369Citrus clementinaCucumis sativus10.1123.2884.76105forward

Expression of CNT30118191

Peptides detected in this lncRNA

>peptide 1 (42 aa)
FVEDDGSSKTPSWVDASSCDGDGGQVDQENSKSNGEGGQNLQ*

>peptide 2 (40 aa)
MGCLSENLLAPSLTSSSLPSIDDDEPLSRSLILSKKMLCLC

>peptide 3 (64 aa)
LLKMMAAPRLLAGLMPVPVMGMVARWTKKTANPMGRGAKICSEVIHSAADEKQNHQPHSQEKHL*

>peptide 4 (61 aa)
MTWGKNAYRDMRISGVSLGISGREDSVNKNKGSNNLSTKTITLGVAVSNNIGSTTQPLVVL*

>peptide 5 (32 aa)
MGKECLQGHENLWRFSWHQWQRRQCKQEQRFQ*

>peptide 6 (29 aa)
MLKRIFESKPKAEFHSIKKNYLLSIYKKN*

Sequence

>CNT30118191
CTTTGTTGAAGATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTTCCTGTGATGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCC
AATGGGGAGGGGGGCCAAAATCTGCAGTGAAGTTATACACAGTGCAGCAGATGAGAAGCAAAATCATCAACCGCACTCACAAGAAAAGCACTTATAAAAA
AGCACTTTACATGTCACACAAACGACCAAAATAATCACGTGCAAGCATCATCATCCAAGGTAAGATCTTATCACCCCAGTCCAACCCAAAAGCCCATCTA
AATTTACTTTTTCACACAACCGCACCGCCAGCCAAACTGACCAATCAACCATTTACCAAAAAACAGAACCAAAGCATTGGATTCCAGATGATAGATTCAA
GTAATGCTGAAAAGAATTTTCGAAAGTAAGCCTAAAGCAGAATTCCACTCAATAAAGAAGAATTATCTATTATCTATATACAAGAAAAATTGAAAAAAAG
AAAACAAACAACACAATATTCCTAATGTAACTAATAATTCAACAAATTGAACACCGAGGGTCTAACAATATTTGTACCGAAGAAAGGAAGATAAAGAATG
ACATGGGGAAAGAATGCTTACAGGGACATGAGAATCTCTGGCGTTTCTCTTGGCATCAGTGGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATA
ATCTCAGCACCAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGCTCCACCACCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGA
CAACACCAGCACCACAGATGGCACCAAGGCACTGCATGACCATGTAGAAGACAGCTCAAACAAAGGTGCTGGTGGTGGCTCCTTGTAGTCTTTGTCTGAT
TGAGCTGATGTCCCAATGGGTTGCCTCTCTGAGAACTTGTTAGCTCCTAGCTTAACATCCTCTTCTTTGCCTTCCATTGACGATGATGAACCTCTCTCTC
GCTCTCTTATTCTCTCAAAGAAGATGCTGTGTTTGTGTT