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Detailed information on CNT30728342


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08733|PIP13_ARATH, E-value = 2e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Corchorus capsularisSetaria viridis21.2112.5680.71140forward
CNT30316259Corchorus capsularisCorylus avellana34.2470.8588.94226forward
CNT30549105Corchorus capsularisIpomoea triloba32.8838.1488.02217forward
CNT30375144Corchorus capsularisArabidopsis thaliana13.4821.9884.2789forward
CNT30709876Corchorus capsularisGlycine max19.736.4190130forward
CNT3095762Corchorus capsularisSolanum tuberosum31.8211.6580.95210forward
CNT30560769Corchorus capsularisActinidia chinensis48.6447.9186.29321forward
CNT30590285Corchorus capsularisMusa acuminata52.5832.5580.4347forward
CNT30646773Corchorus capsularisRosa chinensis32.1257.4585.85212forward
CNT30211930Corchorus capsularisHelianthus annuus30.1560.1286.43199forward
CNT30622764Corchorus capsularisDaucus carota14.722.1587.6397forward
CNT30364641Corchorus capsularisSorghum bicolor21.2118.0980.71140forward
CNT30573330Corchorus capsularisVitis vinifera10.322.391.1868forward
CNT30706529Corchorus capsularisPrunus avium35.315.1579.4233forward
CNT30319296Corchorus capsularisAsparagus officinalis37.7356.2181.53249forward
CNT30118191Corchorus capsularisCitrus clementina25.4516.1783.93168forward
CNT3038888Corchorus capsularisCucumis melo21.2113.5382.86140forward
CNT30116072Corchorus capsularisOryza nivara21.2117.0581.43140forward
CNT3050369Corchorus capsularisCucumis sativus33.9449.6783.93224forward

Expression of CNT30728342

Peptides detected in this lncRNA

>peptide 1 (65 aa)
NKSANDLSTKTGTQGVAMSNNVSSTTQHLIFAVSLESLHYTSSTDGSKALHHYVEDCPCKGQLPC*

Sequence

>CNT30728342
GAACAAAAGTGCCAATGATCTCAGCACCAAGACCGGAACCCAGGGTGTAGCCATGAGCAACAACGTTAGCTCCACCACCCAACATCTCATATTTGCTGTC
TCCTTGGAATCCCTTCACTACACCAGCTCCACAGATGGCTCCAAGGCACTGCATCACTATGTAGAAGATTGCCCTTGTAAGGGACAGCTTCCTTGCTAGG
AACAGACCAAAGGCCCAAGCAATGCCTTGAATGCCAACAGTAGCACATTTGGTCTTAGCCTGAGACACACCCATGACAGTCAAGATGGTGATGTAAAGGA
ACAAGAAAGTGGCCACAAATTCTGCAATGCCAGCCCTGTAGAAAGACCATGACTTGAGTTCACCAGGCTCAAACAATGGTGCTGGTGGTGGCTCCTTGTA
GTCCTTGTCTGTCTGTGCTGATGTCCCAATAGGTTGTCTCTCAGAGAACTTGTTTGCTCCAAGCTTAACATCCTCTTCTTTGCCCTCCATTTTTTCTTTC
ACTCAACAACCAAAGATTGAAGCTTTTTTTACTCTCTCTCTTTCTCTTTCTCAAAAGCAAAAAGCCAAGGCAAGTGAGTGCAGATGAGATAAAGCTGAAG
AATAAGGTGACTTTATAGATGGGATTGTATGGTGTGTGTATTACATGGCTCAAAGCAAAT