« Back to Helianthus annuus search


Detailed information on CNT30211930


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08733|PIP13_ARATH, E-value = 1e-40

BLAST vs NONCODE:
NONGMAT001758, E-value = 5e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Helianthus annuusCorylus avellana58.3160.582.9193forward
CNT30549105Helianthus annuusIpomoea triloba55.2932.1684.7183forward
CNT30728342Helianthus annuusCorchorus capsularis58.3129.2486.53193forward
CNT30502187Helianthus annuusNicotiana attenuata55.895.0982.16185forward
CNT3095762Helianthus annuusSolanum tuberosum58.0110.6584.38192forward
CNT30560771Helianthus annuusActinidia chinensis59.8226.0281.82198forward
CNT30542732Helianthus annuusBrassica napus54.9827.0880.22182forward
CNT30646773Helianthus annuusRosa chinensis52.2746.8884.39173forward
CNT30622764Helianthus annuusDaucus carota29.9122.685.8699forward
CNT30423559Helianthus annuusPapaver somniferum46.2232.4883.66153forward
CNT30573330Helianthus annuusVitis vinifera22.6624.5985.3375forward
CNT3024898Helianthus annuusPopulus trichocarpa35.3522.5983.76117forward
CNT30118191Helianthus annuusCitrus clementina37.7612.0388.8125forward
CNT3050369Helianthus annuusCucumis sativus58.3142.7979.27193forward

Expression of CNT30211930

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKRVHQAQTRVLVVVLCNLCQFELMFQWVVSLRTCWLQA*

>peptide 2 (32 aa)
MGCLSENLLAPSLTSSSLPSIVSLSRRFGFSL*

Sequence

>CNT30211930
GAGATATACAAGAACAAGAAAGTGGCTATGAACTCAGCAATACCAGCTCTGTAAAAAGACCATGAAGAGAGTTCACCAGGCTCAAACAAGGGTGCTGGTG
GTGGTTCTTTGTAATCTTTGTCAGTTTGAGCTGATGTTCCAATGGGTTGTCTCTCTGAGAACTTGTTGGCTCCAAGCCTAACATCCTCTTCCTTACCCTC
CATTGTTTCTCTCTCTAGAAGGTTTGGTTTCTCTCTCTAGAAGGTTTGGTTTCTCTCTCTAGGTTTGATTACCAAGTGGTGAGTTTGTTTGTGAGGAGTG
TGGATGGTGTTCAAGGGGTTTTATAGTTGAG