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Detailed information on CNT30115961


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXF8|PIP13_ORYSJ, E-value = 7e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019525Oryza nivaraCitrullus lanatus6.3131.5188.4169forward
CNT30298239Oryza nivaraTriticum aestivum34.3755.786.44376forward
CNT30393291Oryza nivaraTriticum turgidum34.3728.0286.44376forward
CNT30712987Oryza nivaraMalus domestica golden6.9521.2989.4776forward
CNT30595742Oryza nivaraOryza meridionalis27.7992.1294.08304forward
CNT30573330Oryza nivaraVitis vinifera6.3122.6286.9669forward
CNT30149841Oryza nivaraBrachypodium distachyon9.1425.5891100forward
CNT30575194Oryza nivaraOryza barthii18.74100100205forward
CNT30603734Oryza nivaraOryza punctata26.0521.7195.09285forward
CNT3050369Oryza nivaraCucumis sativus18.2844.3583200forward

Expression of CNT30115961

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNLDSICIFRFIIIRCVTFRLVFYRMDGVAK*

>peptide 2 (91 aa)
MVGCIRGRAMRGRGYRRWRRRGCGRGRRRSRWGAAPGWGRGSPWRCAWRRWRRRRCRRGRRSCRRTTTRCPGSPRWRTWTPTCSPPSPSGC*

>peptide 3 (46 aa)
MPPNDHAMPWIPTVAHLDADLFTPITVRMLMYRNRNVATNSAIPAR*

>peptide 4 (42 aa)
SHQTYYVHIDIITATSDIYKRAYNYAAASFIDHQTVITHVVL*

>peptide 5 (39 aa)
MAAPRLRAGKTAKPMGSGARMGTWESLALRLASVAEKTV*

Sequence

>CNT30115961
TCACACCAAACATACTACGTACACATAGATATAATTACAGCAACATCAGATATATATAAACGCGCTTATAATTATGCAGCGGCTAGCTTCATCGATCACC
AGACGGTAATAACACACGTAGTACTGTAGAGACTTGATCCTCCATCATCTTGCAGCATCAACTCGGTTGATTATTTCAGAGTAATTATCGCTTAATTAAG
ATGATGATGCATGGTAATTAATTAGTCCCGACTCTTGAAGGGGATTGCTCTGATCACCACCACGTGGTAGATGGCCGCCAGTGCCGCTCCGATGAACGGA
CCAACCCAGAAAATCCACTGCACAAATCCATCCATCAATTAGCACTAATCAATGAACTAAATTAACGTGCGATTATTAGCAACTACTCCCTCAGATCCCA
TAAAAAACGAATTTAGTAGGATGAATTTAGATAGTATATGTATATTCAGATTCATAATAATAAGATGTGTCACGTTTCGGTTGGTTTTTTATCGGATGGA
TGGAGTAGCTAAGTAGTTGAGAAAGCATTAAATAATGGTTGGTTGCATACGTGGTCGTGCCATGCGTGGGCGCGGTTATAGACGATGGCGGCGCCGAGGC
TGCGGGCGGGGAAGACGGCGAAGCCGATGGGGAGCGGCGCCAGGATGGGGACGTGGGAGTCCCTGGCGTTGCGCTTGGCGTCGGTGGCGGAGAAGACGGT
GTAGACGAGGACGAAGATCATGCCGCCGAACGACCACGCGATGCCCTGGATCCCCACGGTGGCGCACTTGGACGCCGACTTGTTCACCCCCATCACCGTC
AGGATGCTGATGTACAGGAACAGGAACGTCGCCACGAACTCCGCGATCCCCGCCCGGTAGAACGACCACGACGTCAGCTCCTCCACCTCGAACACCGGCG
CCGCCGGCGGCTCCCGGTAGTCCTTCTCCTCCGCCCCCTGCGCCGCCGTCCCGATCGGCTGCCTCTCCGTGTACCTGTTCGCCCCCAGCCTCACATCCTC
CTCCTTCCCCTCCATTACTATTAATTTGCCTCTTCTTCTTCCTACTACTCACTACTAGTTCTCTTGCCGGAGCCGGAGACGACGACGACGACGA