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Detailed information on CNT30298239


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXF8|PIP13_ORYSJ, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Triticum aestivumOryza sativa51.5646.8486.49348forward
CNT30670956Triticum aestivumSetaria viridis56.8934.4484.11384forward
CNT30640424Triticum aestivumNymphaea colorata23.1118.7783.97156forward
CNT30393291Triticum aestivumTriticum turgidum10050.3100675forward
CNT30366377Triticum aestivumSorghum bicolor54.5274.0485.33368forward
CNT30706529Triticum aestivumPrunus avium20.899.1786.52141forward
CNT30575194Triticum aestivumOryza barthii18.6761.4692.06126forward
CNT30115961Triticum aestivumOryza nivara55.734.3786.44376forward
CNT3050369Triticum aestivumCucumis sativus37.6356.3279.92254forward

Expression of CNT30298239

Peptides detected in this lncRNA

>peptide 1 (54 aa)
VPRLLLVVDDGGAEGARRVDAGAGDGDRRQVHQEHREPDRQRRQDLHRIHPYIS*

>peptide 2 (59 aa)
MMAAPRERAGLMPVPVMGIVARCTRNTANPIGSGARICTESIHTSVNLFIIHEMICSTR*

>peptide 3 (85 aa)
MFHALVREAGALTGTWESLALRLASVAEKTVYTSTKIMPPKLQAMPWMPTVPHLEPEGLPTTPITVSTLMYRNRKVARNSAIPAR*

Sequence

>CNT30298239
CGTCCCACGACTGCTTCTTGTTGTAGATGATGGCGGCGCCGAGGGAGCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATCGTCGCCAGGTGCACCAG
GAACACCGCGAACCCGATCGGCAGCGGCGCCAGGATCTGCACCGAATCCATCCATACATCAGTTAATTTGTTCATCATCCACGAAATGATATGTTCCACG
CGCTAGTTAGAGAGGCCGGTGCACTTACGGGGACGTGGGAGTCTCTGGCGCTGCGCTTGGCGTCGGTGGCGGAGAAGACGGTGTACACGAGCACGAAGAT
CATGCCGCCGAAGCTCCAGGCGATGCCCTGGATGCCCACGGTGCCGCACTTGGAGCCGGAGGGGTTGCCCACCACGCCCATCACCGTGAGCACGCTGATG
TACAGGAACAGGAAGGTGGCCAGGAACTCGGCGATCCCCGCGCGGTAGAAGGACCACGACGTCAGCTCCTCCGCCTCGAACAGCGGCGCCGGCGGCGGCT
CCTTGTAGTCCTTGTCGTCCGCGCCCTGCGCTGCCGTTCCGATCGGCTGCCGCTCCGAGTACCGGTTGGCGCCCAGACGCACGTCCTCCTCCTTGCCCTC
CATTGCCGCTGCTTGAGCTCAGCTGCTTAGCCTGTTAGGCAGAGGAGATGAGATGATGATGGATGGGTGTGCGAG