Detailed information on CNT30560771


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08733|PIP13_ARATH, E-value = 1e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316259Actinidia chinensisCorylus avellana38.6392.1686.73294forward
CNT30549105Actinidia chinensisIpomoea triloba28.2537.7986.51215forward
CNT30502187Actinidia chinensisNicotiana attenuata22.084.6281.55168forward
CNT30163276Actinidia chinensisPistacia vera16.4340.5884125forward
CNT30590202Actinidia chinensisMusa acuminata36.9331.0880.43281forward
CNT30646773Actinidia chinensisRosa chinensis27.8657.4583.96212forward
CNT30211930Actinidia chinensisHelianthus annuus26.0259.8281.82198forward
CNT30623024Actinidia chinensisDaucus carota15.7736.0489.17120forward
CNT30573330Actinidia chinensisVitis vinifera12.0930.1684.7892forward
CNT3050369Actinidia chinensisCucumis sativus29.349.4584.75223forward

Expression of CNT30560771

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MCPMAASLRTCLPRASHPLPYPPFLMLSLSLARSLSLELSHSLRFSLWKAG

>peptide 2 (44 aa)
MVFVEDDGGPETSGGINAGSGDGDGWNPLTTPAPQMAPRHCITI*

Sequence

>CNT30560771
ATTGGCTAATATTTATTAGAATATCGGTATTGGAAGGCCAAAATCCCGATACCTAGCGGCCACGTGTCGACCAATATTTAAAAGCTTGATTAGCACTCCA
TCTATCATCAAGGAACATTAACATTGGCATCAAAAAAAATCTGTTGTGAAAAGACTCACTTGGTCATCCCATGCATGGTCTTTGTTGAAGATGATGGCGG
CCCCGAGACTTCGGGCGGGATTAATGCCGGTTCCGGTGATGGGGATGGCTGGAACCCCTTGACCACACCAGCACCACAGATGGCTCCAAGGCACTGCATC
ACTATATAGAAGATTGCCCTGGTTAGGGACAGCTTCCTTGCCAGAAACAAACCAAAGGTCACTGCTGGGTTGATATGTCCTCCTATCATACCACCAAAGG
CCCAAGCAATCCCCTGAATACCCACAGTGGCACACTTGCTAGGTGACCTGGAAACACCCATTACAGTCAAAATGGTGATGTACAAGAATAAGAAAGTGGC
CACGAACTCGGCAATCCCAGCCCTGTAGAAGGACCATGACTTGAGCTCCCCTGGCTCGAACAGGGGAGCTGGGGGTGGCTCCTTGTAGTCCTTGTCTGTC
TGAGCCGATGTGCCCAATGGCTGCCTCTCTGAGAACTTGTTTGCCCCGAGCTTCACATCCTCTTCCTTACCCTCCATTTCTTATGCTCTCTCTCTCTCTC
GCTCGCTCGCTCTCACTAGAACTCTCTCACTCTCTCCGTTTCTCTCTCTGGAAAGCAGGCT