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Detailed information on CNT30393291


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SXF8|PIP13_ORYSJ, E-value = 9e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Triticum turgidumOryza sativa25.9346.8486.49348forward
CNT30670956Triticum turgidumSetaria viridis28.6134.4484.11384forward
CNT30298239Triticum turgidumTriticum aestivum47.6994.81100640forward
CNT30366377Triticum turgidumSorghum bicolor27.4274.0485.33368forward
CNT30575194Triticum turgidumOryza barthii9.3961.4692.06126forward
CNT30115961Triticum turgidumOryza nivara28.0234.3786.44376forward
CNT3050369Triticum turgidumCucumis sativus18.9356.3279.92254forward

Expression of CNT30393291

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMAAPRERAGLMPVPVMGIVARCTRNTANPIGSGARICTESIHTSVNLFIIHEMICSTR*

>peptide 2 (85 aa)
MFHALVREAGALTGTWESLALRLASVAEKTVYTSTKIMPPKLQAMPWMPTVPHLEPEGLPTTPITVSTLMYRNRKVARNSAIPAR*

>peptide 3 (43 aa)
MLAAALEGDGPDHHHVVDGRQRRAGERAHPEDPLHAQNHDHQA*

>peptide 4 (31 aa)
MAASAAPVNGPTQKIHCMPKTMIIKLNSSQA*

Sequence

>CNT30393291
TTTTTGTAAAGTTAGTCAAACTTAAACAAGTTTGACTTAGTACAAACCCAGAAATCCCAAATGTTTTGGAACGGAACAAGTATCGATGTAATAGCACTCC
AGTTGAAGATCGATCGTTAATTCGATCTTCATTCCTTGTTATTTTATACACGCATTTTGCTTACAAAAGAGAGGGAACCACAAGTACCGAAATTTGCACA
TTTTGGGTAGGCGCGGTGAAGAAGTGCACCACACTTGTAACGCTGACACACCGACTGAAGGACACACACGCTCGCTCGCTCAGGAACAGTACGGCAGACC
GATAGTTACAGGAGTACTCACGCAGGAGCAACGATCAGCACAAACGATGGTCGATGAACGATAGGATTCCATCCGTTCCATGGCCGATTGAGTATGCTAG
CCGCGGCTCTTGAAGGGGATGGCCCTGATCACCACCACGTGGTAGATGGCCGCCAGCGCCGCGCCGGTGAACGGGCCCACCCAGAAGATCCACTGCATGC
CCAAAACCATGATCATCAAGCTTAATTCCTCCCAAGCATGAATAATTAGTCTCTAAGTAGTGACTGATAGTCCTAGTTTTGTTAGTTAAGTGATTCTTCT
TACGTGGTCGTCCCACGACTGCTTCTTGTTGTAGATGATGGCGGCGCCGAGGGAGCGCGCCGGGTTGATGCCGGTGCCGGTGATGGGGATCGTCGCCAGG
TGCACCAGGAACACCGCGAACCCGATCGGCAGCGGCGCCAGGATCTGCACCGAATCCATCCATACATCAGTTAATTTGTTCATCATCCACGAAATGATAT
GTTCCACGCGCTAGTTAGAGAGGCCGGTGCACTTACGGGGACGTGGGAGTCTCTGGCGCTGCGCTTGGCGTCGGTGGCGGAGAAGACGGTGTACACGAGC
ACGAAGATCATGCCGCCGAAGCTCCAGGCGATGCCCTGGATGCCCACGGTGCCGCACTTGGAGCCGGAGGGGTTGCCCACCACGCCCATCACCGTGAGCA
CGCTGATGTACAGGAACAGGAAGGTGGCCAGGAACTCGGCGATCCCCGCGCGGTAGAAGGACCACGACGTCAGCTCCTCCGCCTCGAACAGCGGCGCCGG
CGGCGGCTCCTTGTAGTCCTTGTCGTCCGCGCCCTGCGCTGCCGTTCCGATCGGCTGCCGCTCCGAGTACCGGTTGGCGCCCAGACGCACGTCCTCCTCC
TTGCCCTCCATTGCCGCTGCTTGAGCTCAGCTGCTTAGCCTGTTAGGCAGAGGAGATGAGATGATGATGGATGGGTGTGCGAGAGAGAGATGAGGAAAGG
GAGTGGCTTTGGAGCGCTTCTTATAGCGGGGGTCAATCATGG