Detailed information on CNT30366377


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 9e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Sorghum bicolorOryza sativa67.445.0983.58335forward
CNT30670956Sorghum bicolorSetaria viridis74.043394.29368forward
CNT30640424Sorghum bicolorNymphaea colorata74.2544.482.66369forward
CNT30190473Sorghum bicolorSecale cereale23.7415.6388.14118forward
CNT30298239Sorghum bicolorTriticum aestivum74.0454.5285.33368forward
CNT30393291Sorghum bicolorTriticum turgidum74.0427.4285.33368forward
CNT30228928Sorghum bicolorAnanas comosus17.121.7990.5985forward
CNT30575194Sorghum bicolorOryza barthii23.3456.5993.97116forward
CNT3050369Sorghum bicolorCucumis sativus51.7156.9880.93257forward

Expression of CNT30366377

Peptides detected in this lncRNA

>peptide 1 (52 aa)
EHSPAHGSPWRSSWRRWRRRRCRRGRRSCRQRTRRCPGCRRWRTLRWTWRRP*

>peptide 2 (31 aa)
MPPKDQAMPWMPTVAHFEVDLETPMTVRMEM*

>peptide 3 (44 aa)
NTHRHMGVPGVPLGVGGGEDGVDEDEDHAAKGPGDALDADGGAL*

Sequence

>CNT30366377
CGAACACTCACCGGCACATGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCGCCAAAGGACC
AGGCGATGCCCTGGATGCCGACGGTGGCGCACTTTGAGGTGGACTTGGAGACGCCCATGACGGTGAGGATGGAGATGTAGAGGAAGAGGAAGGTGGCGAC
GAACTCGGCGATGCCCGCGCGGTAGAAGGACCACGACTTGAGCTCACCGGGCTCGAAGAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCGTCGGTG
CCCTGCGCCGCCGTGCCGATGGGCTGGCGCTCCGAGTACTTGTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCCTCCATGTCGCGCGCCGGCTACTATT
AGCTTCTTGCAGCAACCGAGCTTGGTTAGCTAGAGCTAGAAGAAGCTACTTGCTGAGCTGAGCTGAGATGGTGCGGTGCTTGTGTCGCAGCGGGAGT