Detailed information on CNT30405505


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Beta vulgarisChenopodium quinoa40.6513.2387.33150forward
CNT30711417Beta vulgarisGlycine max35.57.3282.44131forward
CNT3045175Beta vulgarisPrunus dulcis37.9430.5782.86140forward
CNT30543417Beta vulgarisBrassica napus38.2120.5284.4141forward
CNT30233367Beta vulgarisBrassica oleracea38.2115.8285.11141forward
CNT3082002Beta vulgarisBrassica juncea38.2119.3483.69141forward
CNT30259602Beta vulgarisBrassica rapa38.2119.0384.4141forward
CNT30359130Beta vulgarisLactuca sativa40.3829.3982.55149forward
CNT3040126Beta vulgarisMarchantia polymorpha33.8818.8581.6125forward

Expression of CNT30405505

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MATTFNNINTYSLILWITVLIHIIFSHGSGKLKPYSTKHN*

Sequence

>CNT30405505
ATGGCCACTACTTTTAATAACATTAATACTTACTCCTTAATTTTGTGGATCACCGTCTTAATTCACATAATATTTTCACATGGGAGTGGAAAGTTGAAAC
CATATAGTACAAAACATAATTGACCATGAGAAAAAAAAAAAGATGTGAGAGAATTTCTTAGTGGAACTTGAGACTAGTCAAGACGTTGTTGTTGACTGGA
TCAGCCAAGTGATCAAGGAGCTTAAGCTCCTTCATGGACTTCTCATCCTTTCCAAAGCCCAATGGGTTGAAAATAGGCCCACCTGGGTAAGCTGGGTCAC
CTGATCCAGCAAAGCCTTTCTCTAGGCCCAAGAAGTATTGCTTTCCCATGGACCCTGGGTTGTACCAAT