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Detailed information on CNT30233367


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Brassica oleraceaSetaria viridis27.6152.3479.67246forward
CNT30281438Brassica oleraceaChenopodium quinoa20.5416.1483.06183forward
CNT30405505Brassica oleraceaBeta vulgaris15.8238.2185.11141forward
CNT30631224Brassica oleraceaVigna unguiculata29.5232.2780.99263forward
CNT30486017Brassica oleraceaOlea europaea36.1432.5678.88322forward
CNT30711417Brassica oleraceaGlycine max44.8922.3580.25400forward
CNT30543417Brassica oleraceaBrassica napus76.7799.5696.35684forward
CNT3082002Brassica oleraceaBrassica juncea65.7780.3895.22586forward
CNT30259051Brassica oleraceaBrassica rapa75.283.8597.16670forward
CNT30350307Brassica oleraceaEragrostis tef34.6840.2978.96309forward
CNT30583045Brassica oleraceaEchinochloa crusgalli19.0821.9981.18170forward
CNT30557458Brassica oleraceaPanicum hallii20.0935.881.56179forward
CNT3040126Brassica oleraceaMarchantia polymorpha30.4240.8779.7271forward

Expression of CNT30233367

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDFRIQENGKPT*

>peptide 2 (33 aa)
MIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

>peptide 3 (36 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGLKKGPPG*

Sequence

>CNT30233367
TTACTTGTAAATAATTCCATAACATTCTTTTAAATATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATG
GCCATTATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTTTAGGATACAAG
AGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCC
AAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCTACCGTTCTTGACCT
CCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAAAGGTCCACCGGGGTAAGCCGGGTCACCTGAACCGGCGAA
ACCTTTCTCTAGACCCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCAGCAAAACCCATCAAAGCCATCTCG
AGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAGTTGAGGCAGCCTTAACAACCAAGGAAACCTTCCTCTGTGATACGG
ACACAGCTGGTTTTGCGCCGAATATCTGTCTAGCAGTCTGAACAGAGGAAGTAAGTGAAGAAGACACAAGCCCTTGTGCTGCCATTCTTTGCTTAAACTC
TTCTCTTCAGTCACCAAGAGACGATGATTATTGAATAATAGTCTGCAGGGAACCTAGTGTTAAGAGTAGAAGGAACAAGGTCCATTAGAAC