« Back to Medicago truncatula search


Detailed information on CNT30145875


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Medicago truncatulaChenopodium quinoa19.7828.7579.75326forward
CNT3045175Medicago truncatulaPrunus dulcis6.1322.0586.14101forward
CNT30540898Medicago truncatulaBrassica napus23.9771.0481.52395forward
CNT30238557Medicago truncatulaBrassica oleracea23.7959.6781.63392forward
CNT3077678Medicago truncatulaBrassica juncea26.8872.2781.26443forward
CNT30264551Medicago truncatulaBrassica rapa26.8857.4681.26443forward
CNT30608086Medicago truncatulaGossypium raimondii8.8637.3486.3146forward
CNT30118713Medicago truncatulaCitrus clementina24.3366.6180.55401forward

Expression of CNT30145875

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPFPSQRVCNCLPSSCMFPLVESRRFGTKGVLFPRELNLLCQEFQVL*

>peptide 2 (38 aa)
MNPPVPSGSESPRGSNPKSPGRLQVMMRPNKVNFILDT*

>peptide 3 (30 aa)
MSLTSNMYEQQVITCIKKFNSFIFNYESRL*

>peptide 4 (37 aa)
MLVRRNLQALSQVLRSIVFPWSQDCTNLGIFCVLQIP*

>peptide 5 (30 aa)
MHIYMLYSCVMGALLSKLMFYLGVGKKTKN*

Sequence

>CNT30145875
AAGTAACCCAATATTGCCAACATAGCTAACCTTCCATTCTTAACTTCCTTCAGCTTTAAATCCTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGT
TAAATATAGGTCCACCAGGGTATGCTGGTTCGCCGGAACCTCCAAGCCCTTTCTCAAGTCCTAAGAAGTATTGTTTTCCCATGGAGCCAGGATTGTACCA
ATCTTGGAATCTTCTGTGTTCTGCAAATCCCATGAATGCCATTTCCATCACAAAGAGTGTGTAATTGTCTGCCCAGTAGTTGTATGTTCCCGCTGGTGGA
ATCACGCCGGTTTGGAACCAAGGGAGTGCTGTTTCCGCGGGAATTAAACCTGCTTTGCCAAGAATTTCAGGTGCTATAGCTCCGGCTGCTCCCAACATTG
CAAATCGGCCGTTGATTATCTCACCGTATGCTAACCATCTTGGTTCAATGAATCCACCGGTTCCTTCGGGATCTGAAAGTCCTAGAGGGTCAAATCCAAA
GTCACCCGGAAGGCTGCAAGTGATGATGAGGCCAAATAAAGTCAATTTCATACTTGACACATAGTGTTACTCAACAAAGTTGCATGCATATCTACATGTT
GTATAGTTGTGTTATGGGTGCTTTGTTATCCAAGCTTATGTTCTACCTAGGGGTGGGCAAAAAAACCAAAAACTGAACTGAACTGAACAAAAAAAAACTG
AACAATTACTAACAGTTCTGAAATTGAACTGAAACAATTCAGTTCAGTTCGAAACAGTTTAGTTCGATTCGAAACAGTTCAGTTCGGTAACTAAAATTTA
ATTTCATTTGTTTTTTTTCATATTTTTTCAAAGGCATCAATAATAACAGTTCAGTTCAGTTCGGAACAGTTCAGTTCGGTTTGAAACAGTTCAGTTCAGT
TATTTTAAATTTAACAAACAGTTCAGTTCGATTCAGTTTTCATCCTGAACTGAACCATGTCCACCCCTAGTTCTAACGCAATCACTTGTCTAAGTATTTG
GATGAAACTATAAAGATAACTTTAAATGTGTTCACAAGTTGTCTTTAGATTATTTCCATAGGTTTTGTAGAATAATTTATTAAAGTAAATAGTTTAATCA
TTTCATCTACTACTGTAAAATTAGATTAAGCATAATCATAAACGATAAATGATAATTAGTGCTTAATCGAAAAGATTTCGCAAAAGCCTTCTGAGATCTT
AGACTCACAAAACATCTACCAGACATAGTTACCACAAGTAATATAAAAATAAAATAAAAAAAATTGGTACTCAAAACAAGTGTTATCCAACAAACTTGCA
TATCTACATGTTGTAATGTTGTGTTAAGGGTACTTAGTCGTATCTAATCTGAGCTTATGGCTCAACACAAGCACTTGCATAAGTAATTTGTTGAGATTGC
AAAATTAAGTTAAAAATATTTCATAATTACATGTCTTTAACTTCAAACATGTATGAACAACAAGTAATAACTTGTATAAAAAAGTTCAATAGTTTCATCT
TTAATTATGAAAGTAGATTATAAATAATCATAAGCGATAATAAACACTTGATCAAAACGTTTTACTTAGGCATACTCTAGGTTCTTAAATCTTACTCAAA
AAACATCCACCTTACAATACTTTTTTCTTCAACTACAAAGGAATTTAC