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Detailed information on CNT30259602


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Brassica rapaChenopodium quinoa24.716.1483.06183forward
CNT30405505Brassica rapaBeta vulgaris19.0338.2184.4141forward
CNT3045167Brassica rapaPrunus dulcis32.6668.5680.58242forward
CNT30543412Brassica rapaBrassica napus73.28100.7497.24543forward
CNT3081731Brassica rapaBrassica juncea61.2767.7694.71454forward

Expression of CNT30259602

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDCRIQENGKPT*

>peptide 2 (35 aa)
MIISVELEFQLLHRLLVFSKPKRVEEWSTGVSRVT*

Sequence

>CNT30259602
TTACTTGTAAATAATTCCATAACATTCTTTTAAATATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATG
GCCATTATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTGTAGGATACAAG
AGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCA
AACCCAAGAGGGTTGAAGAATGGTCCACCGGGGTAAGCCGGGTCACCTGAACCCGCGAAACCTTTCTCTAGACCCAAGAAGTATTGTTTACCCATAGATC
CTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGT
CCCTGCAGGTGGAGTTGATGCAGCCTTAACAACCAAGGAAACCTTCCTCTGTGATACGGACACAGCTGGTTTTACGCCGAATATCTGTCTAGCGGTCTGA
ACAGAGGAGGTAAATGAAGAAGATACAAGCGCTTGTGCTGCCATTTTTTTTGCTTAAACTCTTTTCTTCTGTCACCAAGAGACGATGATTATTGAATAAT
GGTCTGCAGGGAACCTAGTGTTAAAGAGTAGAAGGAACAAG