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Detailed information on CNT30540202


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 8e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Brassica napusChenopodium quinoa43.6619.7582.59224forward
CNT30621314Brassica napusCajanus cajan61.7925.1482.33317forward

Expression of CNT30540202

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (36 aa)
MKIISVELEFQLLHRLLVFSKPKRVEEWSTGVSRVT*

Sequence

>CNT30540202
AAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGTTTCAACTCCTTCATCGACT
TCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAATGGTCCACCGGGGTAAGCCGGGTCACCTGAACCCGCGAAACCTTTCTCTAGACCCAAGAAGTATTG
TTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCC
CAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTG
CAATAGCTCCAGCTGCACCCAACATAGCGAACCTCCCGTTGATGATCTCTCCGTAGGCTAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTC
TGAAAGACCAAGC