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Detailed information on CNT30686175


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632225Triticum urartuVigna unguiculata23.7937.5386.81182forward
CNT3043301Triticum urartuPrunus dulcis26.2728.1985.07201forward
CNT30167177Triticum urartuPistacia vera33.9936.4181.15260forward
CNT30569495Triticum urartuActinidia chinensis21.0528.4585.71161forward
CNT3084160Triticum urartuVigna radiata26.2723.486.07201forward
CNT30441614Triticum urartuAegilops tauschii41.0538.0698.09314forward
CNT30240409Triticum urartuAvena sativa47.3250.0788.12362forward
CNT30667711Triticum urartuTriticum dicoccoides61.0568.8895.93467forward
CNT30128639Triticum urartuCorymbia citriodora17.6527.3888.15135forward
CNT30624974Triticum urartuDaucus carota35.8237.6484.67274forward
CNT30722480Triticum urartuTriticum spelta30.5941.2794.44234forward
CNT30364404Triticum urartuSorghum bicolor47.9752.5887.74367forward
CNT30155236Triticum urartuPrunus persica26.2722.6484.08201forward
CNT30575409Triticum urartuOryza barthii20.9225.7692.5160forward
CNT30175854Triticum urartuVigna angularis26.2760.1886.57201forward

Expression of CNT30686175

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRPAGAPPTVMSKNTLGLAISLAGIGDEG*

>peptide 2 (30 aa)
MDSPPVPLPLVKSPPWHMKSGITRWKALPL*

>peptide 3 (35 aa)
MKNWEPLVLGPALAMERIPGLVCLWTNFSSANFSP*

Sequence

>CNT30686175
CGACAAACGGATACTGAATCCAACGAGCACAAATTACGGATAATTCATAGCGGAGTTCATCTCATTCAAACGGTAAGATAGCAGCAGACACAGGAAGATA
ACCAAGGCCGCCGGACGCAGATCCAGCGGCCCAAAGAGTCCACCTAAAACCCTCCTAAACCAACCACGGAGATCTCATCGGACGGACCAGGGGAAGACAC
GACACACGACACACGACTCTCTTATTTAGATCGACGACACGACACGGGACACACGGGGCGACGGCGACGACGGCGAAAGGCGACCGGCGGGCGGCCGGAT
CTAGAGCTGGCCGCAGTCGGCGATAACGACCTGCTTGGAGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGGATCCCG
GGCTTGGTGTGCTTGTGGACGAACTTCTCGTCGGCGAACTTCTCGCCGTAGATGGACTCGCCGCCGGTGCCGTTGCCCCTGGTGAAGTCGCCGCCCTGGC
ACATGAAGTCGGGGATCACGCGGTGGAAGGCGCTGCCCTTGTAGTGCAGCGGCTTGCCGCTCTTGCCGACGCCCTTCTCGCCGGTGCAGAGCGCGCGGAA
GTTCTCCACCGTCCGCGGCACCGCGTCCTTGTACAGCTCCATCACGATGCGCCCCGCCGGCGCGCCGCCGACGGTCATGTCGAAGAACACCCTCGGGTTG
GCCATCTCTCTCGCCGGGATCGGGGATGAGGGCTAGGGTTTTGAGATGGGGATTTCTGTGCGGAT