Detailed information on CNT30575409


BLAST search results

BLAST vs Swiss-Prot:
sp|P82536|TLP20_SPIOL, E-value = 6e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Oryza barthiiOryza sativa17.8732.74100111forward
CNT30301234Oryza barthiiTriticum aestivum11.5922.1597.2272forward
CNT30568322Oryza barthiiActinidia chinensis25.1241.681.41156forward
CNT30552830Oryza barthiiOryza glaberrima45.5774.08100283forward
CNT30441614Oryza barthiiAegilops tauschii25.7619.3990.62160forward
CNT30240409Oryza barthiiAvena sativa26.2522.5486.5163forward
CNT30667711Oryza barthiiTriticum dicoccoides25.7623.691.25160forward
CNT30140197Oryza barthiiLolium perenne25.2819.6585.35157forward
CNT3010238Oryza barthiiZea mays24.4815.3888.82152forward
CNT30128639Oryza barthiiCorymbia citriodora20.1325.3587.2125forward
CNT30624974Oryza barthiiDaucus carota24.1520.682150forward
CNT30686175Oryza barthiiTriticum urartu25.7620.9292.5160forward
CNT30722480Oryza barthiiTriticum spelta32.8535.9890.2204forward
CNT30364838Oryza barthiiSorghum bicolor24.4830.3488.16152forward
CNT30369645Oryza barthiiOryza glumipatula50.461.7499.36313forward
CNT30100563Oryza barthiiOryza rufipogon57.8138.44100359forward
CNT30175854Oryza barthiiVigna angularis11.4321.2688.7371forward
CNT30550616Oryza barthiiOryza brachyantha19.3220.0789.17120forward

Expression of CNT30575409

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSKNTLVFDIAAALGFCEFHRWGIFFLFV*

>peptide 2 (32 aa)
NHTGVRSQKIHGSQMFSLIDSDIIEAATRIKI*

>peptide 3 (45 aa)
MGDLISPTRHELIKRLTPPPPPPYLGTRRLKTTDTGERRRGTAQI*

Sequence

>CNT30575409
CAACCACACAGGTGTAAGATCACAGAAAATCCACGGATCCCAAATGTTCTCATTGATTGATAGCGATATCATAGAAGCAGCGACACGAATTAAGATTTAA
AACCAACCCCAAGAAGGATCGCAGATCCAACTCCACCGAATCGATCCAAGAACTCCGCCTAATCCAACCAAACCATGGGCGATCTCATCTCACCAACACG
ACACGAACTCATAAAAAGACTAACACCACCACCACCTCCTCCTTATTTAGGGACTCGACGACTCAAGACGACTGATACTGGCGAAAGGCGAAGGGGAACA
GCACAGATCTAGGAGAGCTGGCCGCAGTCGGCGATGACGACCGGCTTGGCGGTGCTCCCCTTATAGTGCAGCGGCTTGCCGCTCTTGCCCACGCCCTTCT
CGCCGGTGCAGAGCGCGCGGAAGTTCTCCGCCGTCCGCGGCACGTCCTTCGCGTACAGCTCCATCACGATCCGCCCCGCCGGAGCTCCGCCGACGGTCAT
GTCGAAGAACACCCTCGTGTTCGACATCGCCGCCGCGCTAGGGTTTTGCGAATTTCACAGATGGGGAATTTTTTTTCTTTTTGTTTGATTTTTTTTGCTG
TTTCACTTCAGATCGCTGCGT