CANTATAdb - search

Detailed information on CNT30196572

BLAST search results

BLAST vs Swiss-Prot:
sp|B5LMR0|RK16_CICAR, E-value = 4e-70

BLAST vs NONCODE:
NONCSAT001352, E-value = 1e-57

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693928	Pisum sativum	Oryza sativa	32.37	7.78	82.15	325	forward
CNT30641762	Pisum sativum	Nymphaea colorata	31.57	9.13	82.97	317	forward
CNT30405603	Pisum sativum	Beta vulgaris	31.37	41.23	85.08	315	forward
CNT30503443	Pisum sativum	Nicotiana attenuata	17.13	50.89	90.12	172	forward
CNT3047594	Pisum sativum	Prunus dulcis	22.61	32.34	89.43	227	forward
CNT30185636	Pisum sativum	Secale cereale	24.6	15.94	81.78	247	forward
CNT30294378	Pisum sativum	Triticum aestivum	29.98	14.75	82.72	301	forward
CNT3086712	Pisum sativum	Vigna radiata	16.43	55.37	89.7	165	forward
CNT30555950	Pisum sativum	Oryza glaberrima	32.37	21.45	82.15	325	forward
CNT30442098	Pisum sativum	Aegilops tauschii	29.98	45.47	82.72	301	forward
CNT30243771	Pisum sativum	Avena sativa	32.97	28.71	81.57	331	forward
CNT30656274	Pisum sativum	Triticum dicoccoides	23.71	47.79	81.93	238	forward
CNT30311863	Pisum sativum	Camelina sativa	22.51	13.84	87.17	226	forward
CNT3083474	Pisum sativum	Brassica juncea	34.16	10.27	83.38	343	forward
CNT30447455	Pisum sativum	Saccharum spontaneum	32.17	44.99	81.11	323	forward
CNT30134355	Pisum sativum	Lolium perenne	28.78	11.48	82.01	289	forward
CNT30229832	Pisum sativum	Ananas comosus	29.88	25.51	81.67	300	forward
CNT30655378	Pisum sativum	Rosa chinensis	32.17	21.75	87.31	323	forward
CNT30689030	Pisum sativum	Triticum urartu	29.98	6.65	82.72	301	forward
CNT30620547	Pisum sativum	Cajanus cajan	15.94	50.96	88.12	160	forward
CNT30357951	Pisum sativum	Lactuca sativa	33.47	35.71	84.52	336	forward
CNT30371107	Pisum sativum	Oryza glumipatula	13.35	31.75	82.09	134	forward
CNT30411335	Pisum sativum	Papaver somniferum	32.37	37.66	85.54	325	forward
CNT30574575	Pisum sativum	Vitis vinifera	34.16	22.48	86.88	343	forward
CNT3025585	Pisum sativum	Populus trichocarpa	11.95	28.5	82.5	120	forward
CNT30604454	Pisum sativum	Oryza punctata	13.15	21.05	81.82	132	forward
CNT30550799	Pisum sativum	Oryza brachyantha	20.32	15.14	80.39	204	forward
CNT30724130	Pisum sativum	Lupinus angustifolius	20.02	60.18	87.56	201	forward

Expression of CNT30196572

Peptides detected in this lncRNA

>peptide 1 (59 aa)
GDIFWDPSHFIKYFVGFNDSYPIFGRSFSRTHTRFGRSYCNRFVWKYAYPYLSTPANIS*

>peptide 2 (33 aa)
MRTHICPPRRTFRDIARRSASSCLDVIQAGSSA*

Sequence

>CNT30196572
GGCGATATTTTCTGGGACCCCTCCCATTTCATAAAGTATTTTGTCGGGTTTAACGACAGCTACCCAATATTCGGGCGATCCTTTTCCCGAACCCATACGC
GTTTCGGTAGGTCTTACTGTAACAGGTTTGTCTGGAAATATGCGTACCCATATTTGTCCACCCCGGCGAACATTTCGTGACATTGCCCGTCGATCCGCTT
CTAGTTGTCTAGATGTGATCCAAGCGGGCTCAAGTGCCTGAAGAGCATATTTTCCGAAGCAAATTTTATTACCGCGAGAGGCTTTTCCTTTCATTCTTCC
TCTATGATGTTTGCGGAATCTCATTCTTTTTGGGTTATACGTAGCAACTCCTTCATTCTAAAATGATTAATTAATTTTTTTTTTTTATTCAATCTTCTAA
ATTTTCTTCTTTGAGAATAAGAATGTAGTAAGAATTCGTCATTTTTTGTTTTATCAAAAGATGGAACGTTATGAGGAAAAGTTGATTAGTCGTTGTTTAG
AAATATCCAAATTTTGATTCCAAATACCCCCCAAATAGTTACAACTGGATAGGAACAATAATCAATTTTAGCTCGAATGGTTTGTAGAGGAACCCTACCT
TCCCTGATCCATTCGACACGTGCTATTTCTTTTCCGTCGATACGTCCCGCAATTTGTATTTGAACTCCTTTTGTATCTGCCTGTTCAACTAATTCAATAC
CTTTTTGCATTGCTTTACGAAACGAAATTCTTGAGAATAAGAATGTAGTAAGAATTCGTCATTTTTTGTTTTATCAAAAGATGGAACGTTATAAGGAAAA
GTTGATTAGTCGTTGTTTAGAAATATCCAAATTTTGATTCCAAATACCCCCCAAATAGGTACAACTGGATAGGAACAATAATCAATTTTAGCTCGAATGG
TTTGTAGAGGAACCCTACCTTCTCTGATCCATTCGACACGTGCTATTTCTTTTCCGTCGATACGTCCCGCAATTTGTATTTGAACTCCCTTTGTATCTGC
CTGT