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Detailed information on CNT30134355


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9C5|RR3_LOLPR, E-value = 1e-110

BLAST vs NONCODE:
NONOSAT001021, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Lolium perenneOryza sativa40.5924.4590.81022forward
CNT30405603Lolium perenneBeta vulgaris13.1943.4686.75332forward
CNT30196572Lolium perennePisum sativum11.4828.7882.01289forward
CNT30503443Lolium perenneNicotiana attenuata8.7465.0982.27220forward
CNT3048584Lolium perennePrunus dulcis8.4265.8486.79212forward
CNT30185636Lolium perenneSecale cereale17.4728.3993.86440forward
CNT30293259Lolium perenneTriticum aestivum23.2741.6592.83586forward
CNT3086712Lolium perenneVigna radiata6.5155.0382.32164forward
CNT30540371Lolium perenneBrassica napus13.1554.884.89331forward
CNT30555950Lolium perenneOryza glaberrima40.5967.4690.611022forward
CNT30147499Lolium perenneMedicago truncatula14.523.1680.82365forward
CNT30442098Lolium perenneAegilops tauschii1660.8896.28403forward
CNT30243771Lolium perenneAvena sativa32.9671.9994.1830forward
CNT30656274Lolium perenneTriticum dicoccoides11.5258.2397.24290forward
CNT3060130Lolium perenneArabidopsis lyrata11.5631.7386.6291forward
CNT30598237Lolium perenneFraxinus excelsior5.2821.6386.47133forward
CNT30447455Lolium perenneSaccharum spontaneum18.5965.1891.88468forward
CNT30229832Lolium perenneAnanas comosus14.8931.8985.6375forward
CNT30655378Lolium perenneRosa chinensis14.5424.6586.61366forward
CNT30689030Lolium perenneTriticum urartu40.7122.6493.661025forward
CNT30351320Lolium perenneEragrostis tef9.73100.4193.06245forward
CNT30364284Lolium perenneSorghum bicolor3.1431.7392.4179reverse complement
CNT30357951Lolium perenneLactuca sativa13.7836.8886.74347forward
CNT30371107Lolium perenneOryza glumipatula12.9177.0191.38325forward
CNT30411335Lolium perennePapaver somniferum13.4639.2887.91339forward
CNT30574575Lolium perenneVitis vinifera14.3823.7287.57362forward
CNT3059026Lolium perenneAmborella trichopoda15.9327.9480.55401forward
CNT30576477Lolium perenneOryza barthii10.5657.9594.36266forward
CNT30116873Lolium perenneOryza nivara8.0228.9893.07202forward
CNT30604560Lolium perenneOryza punctata17.3943.590.64438forward
CNT30557814Lolium perennePanicum hallii15.5737.9191.33392forward
CNT30550799Lolium perenneOryza brachyantha14.1426.4387.64356forward
CNT30336889Lolium perenneCynara cardunculus14.542.5985.21365forward
CNT30724130Lolium perenneLupinus angustifolius6.0845.8186.27153forward

Expression of CNT30134355

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MIYQFSLNLIERGRISSFFQGFSIFFQGFREKKSLVILYFITGQNAMIRLVILRLRISNFLHLILHR*

>peptide 2 (61 aa)
MATQYSGDPFPEPIRVSVGLSVTGLSGNIGTHIFPPRRAYRVIALRPASICLAVIQAGSSA*

>peptide 3 (59 aa)
MMVSFSSRTRNIPLGRASVTKPSKVTFASLGFFFSPIFFCHFYFFSYFSIFIFKIGRSR*

>peptide 4 (32 aa)
MQKNERNIVFLERKTGLFFMFNTRLVLGVLYL*

>peptide 5 (37 aa)
MFSVIFVDITRTVPFLFMSAFRIEVSKSAIVSLPIRL*

>peptide 6 (58 aa)
MHSARAISFPPRRPAIFTLTPFISAFLVNSMAFFIAFRNETLFFNWKAIYSARMLGSL*

Sequence

>CNT30134355
ACCCTATCCCCCATCAGTATTCGTATAGAACTAGAACGGATCTTTCCTGAAATATAGCCCAGGATGATGGTATCATTCTCTAGCCGAACGCGAAACATTC
CGTTGGGTAGGGCTTCCGTAACTAAACCTTCAAAAGTGACTTTTGCTTCTCTTGGGTTTTTTTTCTCTCCTATTTTTTTCTGTCATTTTTATTTTTTCTC
CTATTTTTCCATTTTTATTTTCAAAATAGGAAGGTCCAGATAGAATTCGGGTACTATAGCCACAACGATTACCATATATAACATCAGACTTCTCCTCCAA
TTCTGTTTAGTCGAGCCTCTCGATCTGTCATTATCCCTCGAGAAGTAGAAAGAATAGCAATTTCCATTCCACCCAAAACTTTAGGAATTCCTTGATAGTT
GGTATAAATTCGTAAGCCGGGTCGGCTTATACGCTTTAAAAAGGTTCTTGTGCTATATATTCCTTTTCTAGTATTTCTCTTTTGATGTCGCAAAGTTGAA
ACCAAGAAATATCTGTTACGTTCCTGATGTTTCCGAACACTTTCAATAAAACCCTCTCGTAGAAGTGTTTTAACAATGTTTTCGGTAATATTTGTAGATA
TTACTCGAACTGTTCCTTTTTTATTCATGTCCGCGTTTCGTATAGAGGTTAGTAAATCAGCAATAGTGTCCTTGCCCATAAGACTCTAATTCTAGGTTCC
TCCAAATTTTTCTATAATCAACATGTTTTCATTTTTTTTTCTTTTCATTTTGGATTTTAAAACATATACGTAAAACACAATCTACTAAATTTATTATTTG
ATCTAAATTTTACTTAACTAGTATTTATAACACTTCAGGAGCTAATGAAACTATTTTGGTAAAATTCAATTCTCTCAATTCTTCGGCAATCGCGCCAAAA
ACTCGAGTTCCTTTTGGATTTCCTTTTTGATCAATTATAACCGCGGCATTGTCATCATAGCGGATTATTATACCATCTTCACATTTGAACTCTTTACATG
TACGTACAATTACAGCTCGAATTACTTCGGATCTTTCTAGGGGCATTTGCGTAATGCGTCTTTAATTACAGCAACAATAACATCACCTATACGAGCATAT
CGCTGAATACCAGCGGCTCCTATGACTCGAATACACATTAATTTTCGAGCTCCACTATTATCTGCTACATTTAAAAGGGTCTGAGGTTGAATCATATTAT
TTTGATTTCAATTTGTTTTGTTATTTCAATGCAAAAGAATGAAAGAAATATTGTCTTTTTAGAAAGAAAAACGGGGCTTTTTTTTATGTTCAATACCCGT
TTAGTTTTAGGGGTTCTATATCTCTAATCGAATAAATTGACTTCGTATTGGCATTTTACTGGCAGCTATCTCCATAGCTGCTCTAGCTATAGTTTTGGAT
ACTCCCCCCATTTCATAAAGTATACGACCTGGTTTAACAATGGCTACCCAATATTCGGGGGACCCCTTTCCTGAGCCCATACGTGTTTCTGTGGGTCTTA
GTGTAACCGGTTTGTCGGGAAATATAGGTACCCATATTTTTCCACCACGACGTGCATATCGTGTTATTGCTCTTCGTCCTGCTTCTATCTGTCTCGCTGT
GATCCAAGCAGGCTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACGATTGCCTCGGCATGATTTTCCTTTCATTCTTCCTCGATGTTGTTTGCGA
AATCTGGTTCTTTTCGGGTTATACATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTTTTTTTCAG
GGATTTTCTATTTTTTTTCAAGGATTTCGGGAAAAAAAGTCTCTTGTTATTTTATATTTTATCACTGGACAGAATGCTATGATAAGATTAGTTATTCTTC
GTCTACGAATATCCAATTTTTTACACCTAATACTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCAAATTGTTTGGAGGGGAAGT
CTACCCTTTTTGATGCATTCGGCACGTGCAATTTCTTTTCCTCCGAGACGACCCGCTATTTTTACTTTAACTCCCTTTATATCGGCTTTTTTAGTTAATT
CCATGGCTTTTTTCATTGCCTTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGCTCTCTATAAGGCTCTTTAAC
TTTTTCCGATAGAAATATTAAGTCTCTGGTTTACGGAGTGAATTTCCTTTTGTAGATCTTTCTCTAATTCTTCAATTGTACGGAGTGAATTTCCTTTTGT
AGATATTTCTCTAATTCTTCAATTGCTCCTTTTTTCTTTAATAAATTGGGGAATCCAATATGGATTATGACGTGGACCGTATCGATTTCTTTTTGAATTT
CTATACGTGTAATTACTTTAGAACTTGAACCTGAGTCATTTTTTCTATTATGTGTAATTACTTTGGAACTTGAGTCTGATTCTAGTTTTCTATTCGAGCT
CTTTTTCCTATTCTTTTG