CANTATAdb - search

Detailed information on CNT30604454

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT001352, E-value = 2e-28

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30196572	Oryza punctata	Pisum sativum	21.05	13.15	81.82	132	forward
CNT30553747	Oryza punctata	Oryza glaberrima	72.57	31.97	98.68	455	reverse complement
CNT30371107	Oryza punctata	Oryza glumipatula	65.07	96.68	99.51	408	forward
CNT30147990	Oryza punctata	Brachypodium distachyon	21.37	8.85	92.54	134	reverse complement

Expression of CNT30604454

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RKNCSCYTYMIDLLIYDRCIYSYSDCFLVRISTIRSNRLLISSFSIIT*

>peptide 2 (45 aa)
MHSARAISFPARRPAIFTFTPFISVFLVNSMAFFIAFRNETLFFNW

Sequence

>CNT30604454
AGAAAAAATTGCAGTTGCTACACGTATATGATAGATTTACTCATTTATGATAGATGTATTTATTCATATAGTGACTGTTTCTTAGTTAGGATCTCGACAA
TACGAAGCAATAGGTTGCTTATTAGTTCATTTTCTATAATTACATAGTAGGGTTTATTCTATTTTTTTTTAATCCCCTTTTTGAACCCTAAAGAAAAAAC
TAACGAGTCACACACTAAGCATAGCAATTTTATTAAAAGATTTCTCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTTTTTTTCAGGGAT
TTTAGGGAAAATAAGGCTCTTGTCATTTTTTATTCTATTACTGAACAGAATGGGAAGACAGGGTTGGTTATTCTTCGTCTACGAATATCCAAATTTTAAC
TCCTAATACTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCTTTTTTGATGCATTCGGCA
CGCGCAATTTCTTTTCCCGCGAGACGGCCTGCAATTTTTACTTTTACTCCCTTTATATCCGTTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTC
GGAATGAAACTCTATTTTTTAATTGGA