« Back to Cajanus cajan search


Detailed information on CNT30620547


BLAST search results

BLAST vs Swiss-Prot:
sp|P42353|RK16_VIGUN, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693436Cajanus cajanOryza sativa75.484.5383.54237forward
CNT30641762Cajanus cajanNymphaea colorata71.346.4589.29224forward
CNT30405603Cajanus cajanBeta vulgaris50.6420.8191.19159forward
CNT30196572Cajanus cajanPisum sativum50.9615.9488.12160forward
CNT3048584Cajanus cajanPrunus dulcis42.3641.392.48133forward
CNT30637615Cajanus cajanCapsicum annuum39.1716.8791.87123reverse complement
CNT30185636Cajanus cajanSecale cereale47.779.6886.67150forward
CNT30294378Cajanus cajanTriticum aestivum47.777.3587.33150forward
CNT30540371Cajanus cajanBrassica napus50.6426.3286.79159forward
CNT30508578Cajanus cajanSolanum lycopersicum25.830.2285.1981reverse complement
CNT30553747Cajanus cajanOryza glaberrima59.8713.2184.57188reverse complement
CNT30442098Cajanus cajanAegilops tauschii47.7722.6687.33150forward
CNT30243771Cajanus cajanAvena sativa47.7713.0186.67150forward
CNT30656274Cajanus cajanTriticum dicoccoides38.8524.589.34122forward
CNT30311863Cajanus cajanCamelina sativa50.649.7486.79159forward
CNT3060130Cajanus cajanArabidopsis lyrata50.6417.3486.79159forward
CNT3083474Cajanus cajanBrassica juncea50.644.7686.79159forward
CNT30598237Cajanus cajanFraxinus excelsior50.3225.6982.91158forward
CNT30447455Cajanus cajanSaccharum spontaneum38.8516.9988.52122forward
CNT30135270Cajanus cajanLolium perenne73.576.7283.55231forward
CNT30229832Cajanus cajanAnanas comosus45.5412.1690.21143forward
CNT30655378Cajanus cajanRosa chinensis50.6410.7190.57159forward
CNT30717952Cajanus cajanMalus domestica golden31.5327.5889.999forward
CNT30689031Cajanus cajanTriticum urartu73.574.1484.42231forward
CNT30357951Cajanus cajanLactuca sativa50.6416.988.68159forward
CNT30411335Cajanus cajanPapaver somniferum50.6418.4291.19159forward
CNT30574575Cajanus cajanVitis vinifera50.6410.4290.57159forward
CNT30119130Cajanus cajanCitrus clementina41.413.5390130forward
CNT30585636Cajanus cajanEchinochloa crusgalli75.484.1383.97237forward
CNT30604550Cajanus cajanOryza punctata50.647.2683.65159forward
CNT30557814Cajanus cajanPanicum hallii45.5413.8386.01143forward
CNT30550799Cajanus cajanOryza brachyantha34.398.0282.41108forward
CNT30336888Cajanus cajanCynara cardunculus63.386.2386.43199forward
CNT30724130Cajanus cajanLupinus angustifolius50.9647.994.38160forward

Expression of CNT30620547

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVVSQFHLYYRTVHEIFTSYGSSRMKQFNIYID*

>peptide 2 (43 aa)
MLSRRAQVPEEHIFRSKYDYLDRIFLSFFLYVVYEIWFFGGYN*

>peptide 3 (68 aa)
HCPSSRFYLSRCYPGGLKCLKSISSEANMITSIGYSFHSSSMLFTKSGSLGVIIDGCFSIPSLLQNRT*

Sequence

>CNT30620547
ACATTGCCCGTCGTCCCGCTTCTATTTGTCTAGATGTTATCCAGGCGGGCTCAAGTGCCTGAAGAGCATATCTTCCGAAGCAAATATGATTACCTCGATA
GGATATTCCTTTCATTCTTCCTCTATGTTGTTTACGAAATCTGGTTCTTTGGGGGTTATAATTGATGGTTGTTTCTCAATTCCATCTCTATTACAGAACC
GTACATGAGATTTTCACCTCATACGGCTCCTCGCGAATGAAGCAATTCAATATATATATCGATTAAATCGATAAAATATGTACTAATATTCATATGTTTA
ATGAATAATTGAAT