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Detailed information on CNT3025585


BLAST search results

BLAST vs Swiss-Prot:
sp|Q14FB9|RR3_POPAL, E-value = 8e-75

BLAST vs NONCODE:
NONCSAT001924, E-value = 1e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641762Populus trichocarpaNymphaea colorata62.957.6381.13265forward
CNT30196572Populus trichocarpaPisum sativum28.511.9582.5120forward
CNT30503443Populus trichocarpaNicotiana attenuata56.7770.7186.19239forward
CNT3048583Populus trichocarpaPrunus dulcis59.3839.6289.2250forward
CNT3086712Populus trichocarpaVigna radiata42.0459.489.83177forward
CNT30311863Populus trichocarpaCamelina sativa58.6715.1385.83247forward
CNT3060130Populus trichocarpaArabidopsis lyrata53.2124.4385.27224forward
CNT3083474Populus trichocarpaBrassica juncea83.1410.4883.14350forward
CNT30229832Populus trichocarpaAnanas comosus64.6123.1383.09272forward
CNT30655378Populus trichocarpaRosa chinensis89.3125.3286.97376forward
CNT30357951Populus trichocarpaLactuca sativa31.8314.2488.81134forward
CNT30336888Populus trichocarpaCynara cardunculus88.611.6882.04373forward

Expression of CNT3025585

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLSFRFIQLSSFCTFICNSLILLGLPSVKNFGNPK*

>peptide 2 (64 aa)
EEPALSNPFGACNFFSIKTPCNLYLNSFCMLCSVNSIAFFIALRNETRFFNCPAINSARTFGCM*

Sequence

>CNT3025585
AGAGGAACCTGCCCTCTCTAACCCATTCGGCGCGTGCAATTTCTTTTCCATCAAGACGCCCTGCAATTTGTACTTGAATTCCTTTTGTATGCTCTGCTCA
GTTAATTCAATAGCCTTTTTCATTGCTTTGCGAAATGAAACTCGATTCTTTAATTGTCCGGCTATAAATTCTGCAAGAACATTCGGGTGCATGTAAGGGT
TTTCAATTCTTGTAATAGAAATGTTGAGTTTTCGGTTCATACAATTAAGTTCTTTTTGTACATTTATCTGTAATTCTTTGATCCTTTTAGGTTTACCTTC
TGTTAAAAATTTTGGGAATCCTAAGTAGATTATAACTTGAATCACATCGATTCGTTTTTGAATCTCTATATGTCCAATTCCTTCAACACCAGAAGAAATT
TTCATATTTTTTTGTACATAA