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Detailed information on CNT30357951


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXS1|RK16_HELAN, E-value = 2e-84

BLAST vs NONCODE:
NONCSAT000320, E-value = 7e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690836Lactuca sativaOryza sativa42.9355.7287.13404forward
CNT30641762Lactuca sativaNymphaea colorata35.189.5488.52331forward
CNT30516020Lactuca sativaJuglans regia10.9540.3988.35103reverse complement
CNT30405603Lactuca sativaBeta vulgaris47.6158.6489.96448forward
CNT30196572Lactuca sativaPisum sativum35.7133.4784.52336forward
CNT30503443Lactuca sativaNicotiana attenuata21.1558.8890.45199forward
CNT3047594Lactuca sativaPrunus dulcis27.7437.1891.19261forward
CNT30637715Lactuca sativaCapsicum annuum7.1221.210067reverse complement
CNT30185636Lactuca sativaSecale cereale28.0617.0387.12264forward
CNT30294378Lactuca sativaTriticum aestivum36.881787.32347forward
CNT3086712Lactuca sativaVigna radiata20.464.4389.58192forward
CNT30540371Lactuca sativaBrassica napus41.2364.2486.86388forward
CNT30555950Lactuca sativaOryza glaberrima42.9326.6786.88404forward
CNT30442098Lactuca sativaAegilops tauschii36.8852.4287.32347forward
CNT30243771Lactuca sativaAvena sativa36.1329.4987.35340forward
CNT30656274Lactuca sativaTriticum dicoccoides26.995187.4254forward
CNT30311863Lactuca sativaCamelina sativa26.4615.2589.96249forward
CNT3060130Lactuca sativaArabidopsis lyrata41.6642.7587.5392forward
CNT3083474Lactuca sativaBrassica juncea41.2311.6286.86388forward
CNT30598237Lactuca sativaFraxinus excelsior23.736.2684.75223forward
CNT30447455Lactuca sativaSaccharum spontaneum36.9848.4788.79348forward
CNT30134355Lactuca sativaLolium perenne36.8813.7886.74347forward
CNT30229832Lactuca sativaAnanas comosus36.0328.8387.32339forward
CNT30655378Lactuca sativaRosa chinensis47.2929.9791.46445forward
CNT30717952Lactuca sativaMalus domestica golden7.6520.0693.0672forward
CNT30689030Lactuca sativaTriticum urartu36.887.6687.32347forward
CNT30620547Lactuca sativaCajanus cajan16.950.6488.68159forward
CNT30371107Lactuca sativaOryza glumipatula22.9551.1881.48216forward
CNT30411335Lactuca sativaPapaver somniferum47.1851.4588.29444forward
CNT30574575Lactuca sativaVitis vinifera48.6730.0191.48458forward
CNT3025585Lactuca sativaPopulus trichocarpa14.2431.8388.81134forward
CNT30585636Lactuca sativaEchinochloa crusgalli34.435.6488.58324forward
CNT30604550Lactuca sativaOryza punctata28.3712.1985.39267forward
CNT30550799Lactuca sativaOryza brachyantha25.7217.9785.95242forward
CNT30336889Lactuca sativaCynara cardunculus65.9972.4694.36621forward
CNT30724130Lactuca sativaLupinus angustifolius19.0253.5989.94179forward

Expression of CNT30357951

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTESGSFGVIHRNFMKRLIEFLFNPIEL*

>peptide 2 (44 aa)
IFFICFLQYKGRRKKEILFVQKKKPAPAIFFTQGLFLFYPEMMN*

>peptide 3 (41 aa)
FFLSVFYNTKVEEKKKYCLSKKRNPHPLFFLPKAYFFFIPK*

>peptide 4 (54 aa)
FFYLFFTIQRSKKKRNIVCPKKETRTRYFFYPRPISFLSRNDELSSYRHFGRCY*

Sequence

>CNT30357951
ATTTTTTTTATCTGTTTTTTACAATACAAAGGTCGAAGAAAAAAAGAAATATTGTTTGTCCAAAAAAAGAAACCCGCACCCGCTATTTTTTTTACCCAAG
GCCTATTTCTTTTTTATCCCGAAATGATGAATTGAGCTCGTATAGGCATTTTGGACGCTGCTATTGAAATAGCCCTTCTGGCTATATTTTCTGTTACTCC
ACCCATTTCATAAAGTATTCGACCTGGTTTAACAACAGCTACCCAATATTCGGGAGAGCCTTTACCTGAACCCATACGTGTTTCTGCGGGTCTTACTGTA
ACTGGTTTATCTGGAAATATACGGACCCATATTTTTCCACCGCGACGTGCATTTCGTGTCATTGCTCGTCGACCTGCTTCTATTTGTCTAGAGGTGATCC
AAGCGGGTTCAAGTGCCTGAAGAGCGTATTTACCAAAACAAATAGCATTACCTCGATAAGATATTCCCTTCATTCTTCCTCTATGTTGTTTACGGAATCT
GGTTCTTTTGGGGTTATACATAGAAATTTTATGAAAAGATTAATTGAATTTTTATTCAACCCTATAGAATTATAATTGTTCATTTTTTTTTTTTTGAACA
CAAAATAAAAAGAAGAAACGAATTTCTCATTTTTTGTTCCATCGCTGGATAGAATGCAAAAGGAATAAAGGTTTATTATTCCCCGTCTATAAATATCCAA
ATTTTGATGCCTACCCCATAAATTGTTCGAACTGTATAGGAACAATAATCAATTTTAGCTCGAATGGTTTGTAGTGGAACCCTCCCCTCTCTGATCCATT
CAACACGCGCAATTTCTTTTCCGTCGATACGTCCTGCAATTTGCACTTGAATTCCTTTTGTATCTGCTTGTTCAGTTAATTCTATAGCCTTTTTCATTGC
TTTGCGAAAAGAAACTCTATTTTTTAATTGGCCCGCTATAA