« Back to Papaver somniferum search


Detailed information on CNT30411335


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09G08|RK16_PLAOC, E-value = 4e-87

BLAST vs NONCODE:
NONCQUT006130, E-value = 8e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Papaver somniferumOryza sativa46.239.5588.72399forward
CNT30516020Papaver somniferumJuglans regia15.5352.5584.33134reverse complement
CNT30405603Papaver somniferumBeta vulgaris55.8563.0986.1482forward
CNT30196572Papaver somniferumPisum sativum37.6632.3785.54325forward
CNT3048584Papaver somniferumPrunus dulcis24.9166.7791.16215forward
CNT30185636Papaver somniferumSecale cereale29.216.2690.48252forward
CNT30294378Papaver somniferumTriticum aestivum46.5819.788.81402forward
CNT30540371Papaver somniferumBrassica napus49.3670.5386.15426forward
CNT30555950Papaver somniferumOryza glaberrima46.2326.3488.72399forward
CNT30442098Papaver somniferumAegilops tauschii41.2553.7890.17356forward
CNT30243771Papaver somniferumAvena sativa46.5834.8787.81402forward
CNT30656274Papaver somniferumTriticum dicoccoides28.1648.890.53243forward
CNT30311863Papaver somniferumCamelina sativa30.0115.8688.42259forward
CNT3060130Papaver somniferumArabidopsis lyrata4643.2985.89397forward
CNT3083474Papaver somniferumBrassica juncea49.3612.7686.15426forward
CNT30598237Papaver somniferumFraxinus excelsior24.834.882.71214forward
CNT30447455Papaver somniferumSaccharum spontaneum46.5855.9987.81402forward
CNT30134355Papaver somniferumLolium perenne39.2813.4687.91339forward
CNT30229832Papaver somniferumAnanas comosus42.6431.2988.59368forward
CNT30655378Papaver somniferumRosa chinensis51.3329.8388.04443forward
CNT30717952Papaver somniferumMalus domestica golden8.4620.3387.6773forward
CNT30689030Papaver somniferumTriticum urartu46.588.8888.81402forward
CNT30620547Papaver somniferumCajanus cajan18.4250.6491.19159forward
CNT30357951Papaver somniferumLactuca sativa51.4547.1888.29444forward
CNT30371107Papaver somniferumOryza glumipatula12.6325.8382.57109forward
CNT30574575Papaver somniferumVitis vinifera52.2629.5590.69451forward
CNT30585636Papaver somniferumEchinochloa crusgalli45.086.7888.17389forward
CNT30604550Papaver somniferumOryza punctata29.4311.5987.8254forward
CNT30550799Papaver somniferumOryza brachyantha30.7119.6786.79265forward
CNT30336889Papaver somniferumCynara cardunculus51.4551.8187.16444forward
CNT30724130Papaver somniferumLupinus angustifolius20.2852.490.29175forward

Expression of CNT30411335

Peptides detected in this lncRNA

>peptide 1 (77 aa)
PHCCPLHLKGFEVESYHYFLSFLSMQRKGKRRKKYFLSRKKGLRFFVFLSQRLLSFGCTSLFCNKELSSYRHFGRSD*

>peptide 2 (34 aa)
MIASVGYSLHSSSMLFTEFGSFGVIHSNYTKGSI*

Sequence

>CNT30411335
CCCCACTGTTGTCCGCTACATTTAAAAGGGTTTGAGGTTGAATCATATCATTATTTTTTATCGTTTCTTTCAATGCAAAGAAAGGGCAAAAGAAGAAAGA
AATATTTTTTGTCCAGAAAAAAAGGCCTGCGGTTTTTTGTTTTTTTATCACAAAGACTCCTTTCCTTTGGTTGCACATCCCTATTCTGCAATAAGGAATT
GAGTTCGTATAGGCATTTTGGACGCAGCGATTGAAATAGCTTCTCTGGCTACAATTTCTGATACTCCACCCATTTCATAAAGTATTCGACCCGGTTAAAC
GACAGATACCCAATATTCGGGAGATCCCTTTCCCGAGCCCATACGCGTTTCCGTAGGTCTTAATGTAACAGGTTTGTCTGGAAATATACGTACCCATATT
TTTCCACCACGACGCGCATATCGTGTCATTGCTCGTCGCCCTGCTTCTATTTGTCTAGATGTGATCCAGGCGGGTTCAAGTGCCTGAAGAGCATATCTAC
CGAAACTAATATGATTGCCTCGGTAGGATATTCCCTTCATTCTTCCTCTATGTTGTTTACGGAATTTGGTTCTTTTGGGGTTATACATAGCAATTATACC
AAAGGGTCAATCTAATTTTTATTTAACCCTATAGAATTAAAAGATTTGAAATTGATCATTTTAGATTAAAGGGAAAAATAATGAAAGGTTTTGTTTTTTT
TTGGTCCTGTGCTAGATAGAAAAGTCAAAGAAGAAATCTTTGATTATTTCTCGTCTGCAAATATCCAAATTTTTATGCCTAATACCCCATAAATAGTCCG
AACTGTATACGAACAATAATCAATTTTAGCTCGAATGGTTTGTAGGGGAACCCTACCTTCTCT