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Detailed information on CNT30405603


BLAST search results

BLAST vs Swiss-Prot:
sp|P17353|RK16_SPIOL, E-value = 9e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Beta vulgarisOryza sativa44.98.2189.5343forward
CNT30641762Beta vulgarisNymphaea colorata42.289.3190.4323forward
CNT30516020Beta vulgarisJuglans regia16.2348.6386.29124reverse complement
CNT30196572Beta vulgarisPisum sativum41.2331.3785.08315forward
CNT30503443Beta vulgarisNicotiana attenuata15.0534.0292.17115forward
CNT3048584Beta vulgarisPrunus dulcis41.6298.7687.74318forward
CNT30637715Beta vulgarisCapsicum annuum8.7721.295.5267reverse complement
CNT30185636Beta vulgarisSecale cereale33.6416.5889.49257forward
CNT30294378Beta vulgarisTriticum aestivum43.4616.2788.86332forward
CNT30224357Beta vulgarisHordeum vulgare22.2511.2681.18170forward
CNT3086712Beta vulgarisVigna radiata14.1436.2488.89108forward
CNT30540371Beta vulgarisBrassica napus55.6370.3686.59425forward
CNT30555950Beta vulgarisOryza glaberrima44.922.6489.5343forward
CNT30442098Beta vulgarisAegilops tauschii43.4650.1588.86332forward
CNT30243771Beta vulgarisAvena sativa43.4628.7988.25332forward
CNT30656274Beta vulgarisTriticum dicoccoides32.595089.56249forward
CNT30311863Beta vulgarisCamelina sativa32.5915.2591.16249forward
CNT3060130Beta vulgarisArabidopsis lyrata51.4442.8688.04393forward
CNT3083474Beta vulgarisBrassica juncea55.6312.7386.59425forward
CNT30598237Beta vulgarisFraxinus excelsior29.1936.2684.3223forward
CNT30447455Beta vulgarisSaccharum spontaneum44.947.7788.92343forward
CNT30134355Beta vulgarisLolium perenne43.4613.1986.75332forward
CNT30229832Beta vulgarisAnanas comosus42.5427.6487.69325forward
CNT30655378Beta vulgarisRosa chinensis62.4332.1290.78477forward
CNT30717952Beta vulgarisMalus domestica golden9.8220.898875forward
CNT30689030Beta vulgarisTriticum urartu43.467.3388.86332forward
CNT30620547Beta vulgarisCajanus cajan20.8150.6491.19159forward
CNT30357951Beta vulgarisLactuca sativa58.6447.6189.96448forward
CNT30371107Beta vulgarisOryza glumipatula22.2540.2881.76170forward
CNT30411335Beta vulgarisPapaver somniferum63.0955.8586.1482forward
CNT30574575Beta vulgarisVitis vinifera59.1629.6290.04452forward
CNT30585636Beta vulgarisEchinochloa crusgalli42.285.6389.47323forward
CNT30604550Beta vulgarisOryza punctata34.5512.0587.12264forward
CNT30557814Beta vulgarisPanicum hallii21.7316.0589.76166forward
CNT30550799Beta vulgarisOryza brachyantha32.8518.6386.45251forward
CNT30336889Beta vulgarisCynara cardunculus58.6452.2887.72448forward
CNT30724130Beta vulgarisLupinus angustifolius23.4353.5988.27179forward

Expression of CNT30405603

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MLFTKSSSFGVIHGNFIKRSIEFLLNLMGLKIRIHWVEKRMKKVVIFCSIVKSKQKDKSSKGLLFLVYKYPNFNTQYPIDSSNRIGTIINFRANGL*

Sequence

>CNT30405603
ATTTCCTTTAGTTCTACATTCTTATCCTGAAATAATGAATTGAGTTCTTATAGGCATTTTCGATGCCGCTATTGCGATAGCCCTTCGGGCTATATTTTCG
GCCACTCCGCTTATTTCATAAAGTATTCGACCTGGTTTGACAACAGCTACCCAATATTCGGGAGATCCTTTCCCCGAACCCATACGGGTTTCCGCGGGTC
TTACTGTAACTGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACCGCGACGTGCATTTCGTGTCATTGCCCGTCGCCCTGCTTCTATTTGTCTAGA
CGTGATCCAAGCGGGTTCAAGTGCCTGAAGAGCATATCTTCCGAAACAAATACGATTCCCTCGATAAGACATTCCCTTCATTCTTCCTCTATGTTGTTTA
CGAAATCTAGTTCTTTTGGGGTTATACATGGCAATTTTATTAAAAGGTCAATCGAATTTTTATTAAACCTTATGGGATTAAAAATTAGAATTCATTGGGT
GGAAAAAAGAATGAAAAAGGTTGTCATTTTTTGTTCCATCGTTAAATCGAAACAGAAAGACAAGTCAAGTAAAGGCTTATTATTCCTCGTCTATAAATAT
CCAAATTTTAATACCCAATACCCCATAGATAGTTCGAACCGTATAGGCACAATAATCAATTTTCGCGCGAATGGTTTGTAGGGGAACCCTACCCTCTCTT
ATCCATTCGATACGTGCAATTTCTTTTCCATCGATACGACCTGCAATTTGGATTTGAATTCCTT