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Detailed information on CNT30574575


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0ZIY1|RK16_VITVI, E-value = 1e-80

BLAST vs NONCODE:
NONCQUT006130, E-value = 4e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Vitis viniferaOryza sativa26.159.5588.22399forward
CNT30641762Vitis viniferaNymphaea colorata24.1810.6388.62369forward
CNT30550215Vitis viniferaIpomoea triloba24.448.1591.15373forward
CNT30516020Vitis viniferaJuglans regia7.1442.7590.83109reverse complement
CNT30405603Vitis viniferaBeta vulgaris29.6259.1690.04452forward
CNT30196572Vitis viniferaPisum sativum22.4834.1686.88343forward
CNT3048584Vitis viniferaPrunus dulcis21.36101.2491.1326forward
CNT30637715Vitis viniferaCapsicum annuum4.3921.210067reverse complement
CNT30294378Vitis viniferaTriticum aestivum26.820.0486.55409forward
CNT30540371Vitis viniferaBrassica napus28.0570.8689.25428forward
CNT30555950Vitis viniferaOryza glaberrima26.1526.3488.22399forward
CNT30147499Vitis viniferaMedicago truncatula24.924.1184.47380forward
CNT30442098Vitis viniferaAegilops tauschii23.7254.6887.85362forward
CNT30243771Vitis viniferaAvena sativa26.835.4786.8409forward
CNT30656274Vitis viniferaTriticum dicoccoides16.3850.288.8250forward
CNT30310337Vitis viniferaCamelina sativa22.1520.2390.83338forward
CNT3060130Vitis viniferaArabidopsis lyrata25.9543.1890.4396forward
CNT3083474Vitis viniferaBrassica juncea28.0512.8289.25428forward
CNT30598237Vitis viniferaFraxinus excelsior14.6136.2684.3223forward
CNT30447455Vitis viniferaSaccharum spontaneum26.4156.1386.85403forward
CNT30134355Vitis viniferaLolium perenne23.7214.3887.57362forward
CNT30229832Vitis viniferaAnanas comosus23.8530.9587.64364forward
CNT30655378Vitis viniferaRosa chinensis30.1430.9893.7460forward
CNT30717952Vitis viniferaMalus domestica golden4.9120.8993.3375forward
CNT30689030Vitis viniferaTriticum urartu26.89.0386.55409forward
CNT30620547Vitis viniferaCajanus cajan10.4250.6490.57159forward
CNT30357951Vitis viniferaLactuca sativa30.0148.6791.48458forward
CNT30371107Vitis viniferaOryza glumipatula7.0125.3685.05107forward
CNT30411335Vitis viniferaPapaver somniferum29.5552.2690.69451forward
CNT3053857Vitis viniferaAmborella trichopoda21.1725.7688.54323forward
CNT30585636Vitis viniferaEchinochloa crusgalli25.496.7886.89389forward
CNT30116873Vitis viniferaOryza nivara12.7127.8385.05194forward
CNT30336889Vitis viniferaCynara cardunculus30.0153.4490.61458forward
CNT30724130Vitis viniferaLupinus angustifolius13.7662.8788.57210forward

Expression of CNT30574575

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKEFVIFCFITLLDRTKEKTRKGLLFYSSSTNIQILMPNTPYIVRTL*

>peptide 2 (47 aa)
MFSVILVDAIRTVTFLSMSTFRIEVIMSAIVSLPMMNSNYWCLLILI*

>peptide 3 (38 aa)
MLFTESGSFGVIHSNYIKWSIESLFNPIELISNCSFLF*

>peptide 4 (93 aa)
MSVSAITSSYDSNTHQFSGPAVVRYIQMGLGLNHIIFLFDFSMQRTKEKKRNIVCPKSKKETCNFFSSQRPLFLLFLSRNNELSSYRHFGRRY*

>peptide 5 (55 aa)
MKLSQFPDDRTKNSSSFWVSFLINNNCSIVIISYYHTVVTFEFFTGTYNYSSDYF*

Sequence

>CNT30574575
TTGCTTTCCTGATGTTTCCTCACGTTTTCGATAAAACCTTCCCGTAAAAGTATTTTAACAATGTTTTCGGTGATATTAGTAGATGCTATTCGAACCGTTA
CTTTTCTATCCATGTCGACATTTCGTATAGAGGTTATTATGTCAGCAATAGTGTCCCTGCCCATGATGAACTCAAATTATTGGTGCCTGCTAATTTTGAT
ATAATCAACATGCTCTTTTTTATTTTTTTATTTATGAATTCTATTTAATATTAAATTAAAGGTATATGCGTGAAACACAATCTACTAATTAATCTATTTC
ATTCGCTTACTATAACTATATCATGGTCTCGTCTTATAATACCTCAGGGGCTAAGGAAACTATTTTAGTAAAATGAAACTGTCTCAATTCCCGGACGATC
GCACCAAAAATTCGAGTTCCTTTTGGGTTTCCTTCTTGATCAATAATAACTGCAGCATTGTCATCATATCGTATTATCATACCGTTGTCACGTTTGAGTT
CTTTACAGGTACGTACAATTACAGCTCTGATTACTTCTGATCTTTCTAGAGGCATATTTGGTACTACTTCTTTGATCACAGCAACAATAACGTCACCAAT
ATGAGCGTATCGGCGATTACTAGTTCCTATGATTCGAATACACATCAATTCTCGGGCCCCGCTGTTGTCCGCTACATTCAAATGGGTCTGGGGTTGAATC
ATATCATTTTTTTATTCGATTTTTCAATGCAAAGAACGAAGGAAAAAAAAAGAAATATTGTTTGTCCAAAATCAAAAAAAGAAACCTGCAATTTTTTTTC
ATCCCAAAGACCTCTTTTTCTTTTATTCCTATCCCGAAATAATGAATTGAGTTCGTATAGGCATTTTGGACGCCGCTATTGAAATAGCTTTTCTAGCTAT
ATTTTCTGCTACTCCGCCCATTTCATAAAGTATTCTACCTGGTTTAACGACAGCTACCCAATATTCGGGGGATCCTTTCCCCGAACCCATACGTGTTTCT
GTAGGTCTTACTGTAACTGGTTTGTCTGGAAATATACGTACCCATATTTTTCCACCACGGCGTACGTTTCGTGTCATTGCTCGTCGCCCCGCTTCTATTT
GTCTAGATGTGATCCAAGCAGGTTCAAGTGCTTGAAGAGCGTATCTACCGAAACAAATACGATTACCTCGATAAGATATTCCCTTCATTCTTCCTCTATG
TTGTTTACGGAATCTGGTTCTTTTGGGGTTATACATAGCAATTATATCAAATGGTCAATCGAATCTTTATTCAACCCTATAGAATTAATTTCTAATTGTT
CATTTTTGTTTTGATTGAAGAGAAAAAGAATGAAAGAATTTGTCATTTTTTGTTTCATTACATTACTGGATAGAACGAAAGAAAAGACAAGGAAGGGCTT
ATTATTTTATTCCTCGTCTACAAATATCCAAATTTTGATGCCTAATACCCCATATATAGTTCGAACTCTATAGGAACAATAATCAATTTTAGCTCGAATG
GTTTGTAGGGGAACCCTTCCTTCTCT