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Detailed information on CNT30311863


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLX1|RR3_NASOF, E-value = 1e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690836Camelina sativaOryza sativa14.733.186.67240forward
CNT30405603Camelina sativaBeta vulgaris15.2532.5991.16249forward
CNT30196572Camelina sativaPisum sativum13.8422.5187.17226forward
CNT30503443Camelina sativaNicotiana attenuata17.5884.9187.11287forward
CNT3048583Camelina sativaPrunus dulcis23.5260.8689.32384forward
CNT30294297Camelina sativaTriticum aestivum15.4949.987.75253forward
CNT3086712Camelina sativaVigna radiata12.9270.8189.1211forward
CNT30540371Camelina sativaBrassica napus20.3354.9795.78332forward
CNT30442098Camelina sativaAegilops tauschii15.4938.2287.75253forward
CNT30243771Camelina sativaAvena sativa14.9421.1687.7244forward
CNT30656274Camelina sativaTriticum dicoccoides14.944987.7244forward
CNT3060130Camelina sativaArabidopsis lyrata47.2784.1998.06772forward
CNT3083474Camelina sativaBrassica juncea82.9840.5895.721355forward
CNT30598237Camelina sativaFraxinus excelsior13.6636.2681.61223forward
CNT30447455Camelina sativaSaccharum spontaneum14.9433.9886.07244forward
CNT30229832Camelina sativaAnanas comosus30.6842.682.44501forward
CNT30655378Camelina sativaRosa chinensis41.5245.6687.46678forward
CNT30679333Camelina sativaTriticum urartu15.4925.9587.75253forward
CNT30620547Camelina sativaCajanus cajan9.7450.6486.79159forward
CNT30357951Camelina sativaLactuca sativa15.2526.4689.96249forward
CNT30371107Camelina sativaOryza glumipatula15.6860.6681.64256forward
CNT30411335Camelina sativaPapaver somniferum15.8630.0188.42259forward
CNT3025585Camelina sativaPopulus trichocarpa15.1358.6785.83247forward
CNT30604560Camelina sativaOryza punctata17.5128.482.52286forward
CNT30336888Camelina sativaCynara cardunculus28.7814.7285.53470forward
CNT30724130Camelina sativaLupinus angustifolius11.4555.9987.17187forward

Expression of CNT30311863

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MYHNMLDFCFHWCIQVFLNTLNILHIVDRRIYPPIR*

>peptide 2 (46 aa)
VSAGLTVTGLSGNIRTQIFPPRRTFRVIARRPASICLDVIQAGSSV*

>peptide 3 (63 aa)
FRRSYCNWFIWKYTYPNFSTASYISCHCSSPCFYLSRCDPSGFKCLKSISAKTNTIPTRRYSF*

>peptide 4 (64 aa)
MLFTKSGSFWVIHSNYIKGVLMEIFIQSYRIADFILKHKKEDCTFLLLYSVILHSFCFLSLDKM*

Sequence

>CNT30311863
GTTTCCGCAGGTCTTACTGTAACTGGTTTATCTGGAAATATACGTACCCAAATTTTTCCACCGCGTCGTACATTTCGTGTCATTGCTCGTCGCCCTGCTT
CTATTTGTCTAGATGTGATCCAAGCGGGTTCAAGTGTTTGAAGAGCATATCTGCCAAAACAAATACGATTCCCACGAGAAGATATTCCTTTTAGTCTTCC
TCGATGTTGTTTACGAAATCTGGTTCTTTTTGGGTTATACATAGCAATTATATCAAAGGAGTTTTGATGGAAATTTTTATTCAATCTTATAGAATTGCTG
ATTTTATTCTTAAACATAAAAAAGAAGACTGCACTTTTTTATTACTGTATAGTGTTATACTACATAGTTTTTGTTTTTTATCGTTGGATAAAATGTAAAG
ATAAAGAAAGTTTTTTTATTCTTCGTCTACGAATATCCAAATTTTTATTCCTAAGACCCCATAAATAGTTCGAACTGTATAGGAACAGTAATCAATTTTA
GCTTCAATTGTTTGTAAAGGAACTCTGCCTTCTCTGATCCATTCAACACGTGCAATTTCTTTTCCGTCGATACGTCCTGCAATTTGTACTTGAATTCCTT
TTGTATTCGCCTGTTCAGTTAATTCAATAGCTTTTTTCATTGCTTTTCGAAAAGAAACACGATTTTTTAATTGTCCAGCTATAAATTCTGCAAGAATATT
AGGATCCCCATACGGATTGGAAATTCTGGTAATAGCAATGTTGAGTTTTCTATTGACACAATTTAGTTCTTTTTGAACATTCATCTGTAATTCTTCGACT
CTTCGGGGTTTATCTTCAATTAATAATTTAGGAAATCCCATATAGATTATGATCTGGATAAGATCGATTCTTTTTTGAATTTCGATACGTGCAATTCCCT
CCATACCAGAGGATATTCTTATATTTTTTTGGACATAATTTTTAATACAGTCTCGGATTTTTTTATCTTCTTCTAAACCTTCAGAATACTTTTTTGGTTG
TGCAAACCAAAGAGAATGATGACTTTGGGTTGTACCAAGTCTGAAACCAAGTGGATTTATTTTTTGTCCCATAGGCCTCCACTACTATATGTATCATAAC
ATGTTAGATTTCTGTTTTCATTGGTGCATCCAGGTTTTTTTAAATACATTAAATATTCTTCATATTGTTGATAGAAGGATATATCCTCCAATACGATAGT
TATATGACAAGTGGATCGTTTTATTGGGTAACTTCGTCCTCGGGCACGAGGTTTTAATTTTTTCACAGTATTTCCTTGGTTCACCTCAGCTTTACTAATG
ATTAAATTGGTTTCTTTGAAACCCTTATTGTGACTAGCGTTCGCTGCGGCAGAATAAACCAATTTAAAAATGGGATAACATCCTCGATAAGGCATAAGTT
CTAATATCATAAGTGCTTCTTCGTAGGAACGTCCACGTATTTGATCAATTACTCTCCGGGCTTTATGGGCAGACATAGATATATATTGCCCTAAAGCATA
TACGGAAGTATATGATTTCTTCTTTCTATTCTTTATCATAAGGTTTACCTCTCACTAAAAAAAAATCTATATTCATTTTTTTTAATTCATTTAATTAACG
ACGAGATCTATTANGATAAATTCAATGTCCTCG