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Detailed information on CNT30294378


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H50|RK16_WHEAT, E-value = 4e-86

BLAST vs NONCODE:
NONCSAT000320, E-value = 4e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405603Triticum aestivumBeta vulgaris16.2743.4688.86332forward
CNT30196572Triticum aestivumPisum sativum14.7529.9882.72301forward
CNT3048584Triticum aestivumPrunus dulcis10.5366.7788.37215forward
CNT30224357Triticum aestivumHordeum vulgare41.4556.0396.57846forward
CNT30396291Triticum aestivumTriticum turgidum16.9589.8798.84346reverse complement
CNT30585847Triticum aestivumMusa acuminata6.8621.4487.86140reverse complement
CNT30540371Triticum aestivumBrassica napus16.2254.885.5331forward
CNT30442098Triticum aestivumAegilops tauschii32.4410099.7662forward
CNT30656274Triticum aestivumTriticum dicoccoides24.410099498forward
CNT3060130Triticum aestivumArabidopsis lyrata14.1631.5287.2289forward
CNT30598237Triticum aestivumFraxinus excelsior6.5221.6385.71133forward
CNT30135270Triticum aestivumLolium perenne39.0523.1890.84797forward
CNT30229832Triticum aestivumAnanas comosus17.7930.8787.6363forward
CNT30655378Triticum aestivumRosa chinensis17.9324.6588.25366forward
CNT30713541Triticum aestivumMalus domestica golden3.3832.0991.369reverse complement
CNT30344054Triticum aestivumEragrostis tef10.7840.2289.09220reverse complement
CNT30620547Triticum aestivumCajanus cajan7.3547.7787.33150forward
CNT30357951Triticum aestivumLactuca sativa1736.8887.32347forward
CNT30411335Triticum aestivumPapaver somniferum19.746.5888.81402forward
CNT30574575Triticum aestivumVitis vinifera20.0426.886.55409forward
CNT30604550Triticum aestivumOryza punctata23.4721.8689.98479forward
CNT30557814Triticum aestivumPanicum hallii26.953.0990.71549forward
CNT30550799Triticum aestivumOryza brachyantha16.6125.1791.45339forward
CNT30724130Triticum aestivumLupinus angustifolius7.545.8187.58153forward

Expression of CNT30294378

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVRSESRNGASKKFLSELIFSVLLTRAALYYCFKFVVLVSS*

>peptide 2 (41 aa)
MDSARAISFPPRRPAIFTFTPLISAFLVNSMAFFIAFRNEN*

>peptide 3 (56 aa)
NKLTSYGHFTGSYGDSCSSYSFRYSPHFIKYTTRFNNGYPIFGGPLSRAHTCFRGS*

>peptide 4 (59 aa)
MIYQFSLNLIERGIISSFAGISGKKSLVIFDSINGQNPKTRLLILRLRISKFLHLILHR*

>peptide 5 (29 aa)
MIYQFSLNLIERGIISSFAGISGKKSLVIF

>peptide 6 (33 aa)
MTHLLIYDRGIYSYSDCFLVRISTIRSNRLVIS*

>peptide 7 (39 aa)
MLYNIAFYDVIHRPYIVESYILFISSSFFLSSLPLSTSL*

Sequence

>CNT30294378
AATAAATTGACTTCGTATGGGCATTTTACTGGCAGCTATGGAGATAGCTGCTCTAGCTACAGTTTCAGATACTCCCCCCATTTCATAAAGTATACGACCA
GGTTTAACAACGGATACCCAATATTCGGGGGACCCCTTTCCCGAGCCCATACGTGTTTCCGTGGGTCTTAGTGTAACCGGTTTGTCGGGAAATATACGTA
CCCATATTTTTCCACCACGACGTGCATATCGTGTTATTGCTCTTCGTCCTGCTTCTATCTGTCTCGCCGTGATCCAAGCGGGTTCAAGTGCTTGAAGAGC
ATATCTACCAAAACAAATACGATTGCCTCGGCAGGATTTTCCTTTCATTCTTCCTCTATGTTGTTTGCGAAATCTGGTTCTTTTGGGGTTATACATAGCA
ATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTATAATTTCTTCTTTTGCAGGGATTTCAGGAAAAAAGTCTCTTGTCATTTTT
GATTCTATCAATGGACAGAATCCGAAGACAAGATTACTTATTCTTCGTCTACGAATATCCAAATTTTTACACCTAATACTCCATAGATAGTCCGAATTGG
ATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCCTTTTTAATGGATTCGGCGCGTGCAATTTCTTTTCCTCCGAGACGACCC
GCAATTTTTACTTTTACTCCCCTTATATCTGCTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTCGGAATGAAAATTGATAAATCATTTAATATA
ATTGCTATGCTTAGTGTGTGACTCGTTATTTTTTTCTTTTTTTTAAGAAAAAAACTTAGTAATTATAGAAAATTAACTAATAACCAACCTATTGCTTCGT
ATTGTCGAGATCCTAACTAAGAAACAGTCACTATATGAATAAATACCTCTATCATAAATGAGTAGATGTGTCATATAGTTGTAGCAACTGCAATTTTTTC
TCTAAAAAAGAAAAGGGATTCTAGGTTGTGAAGCAAAACTAAAGGGATGTGGATAAAGGGAGGGATGATAGAAAGAAGGAAGAGGAAATAAATAAGATAT
AGGATTCCACTATGTATGGTCTATGAATTACATCATAAAAGGCAATGTGATAAAGCATCAATATAATAAAAATAATAGATAATGTAATCCTTCTTAAAAA
AATCCTTATTTTGACTCTTATTGAATCGCGGTAAAGTATTCTAATTCAATAAGAATTTCGCGGGCGAATATTTACTCTTTCCTGTCTTATTTGTTAATTT
ATAAACTTACCAAATAAGACAATTTTTTTGGTTTGTTCCGCCATCCCACCCAATGAAGTGTTAGGATTCTTTTCAATAAAATCCTATGGAATCATAGGTT
CTGTCGTTCCCACTGCTTCTCCTTGAATGGTTAGGTCTGAATCCCGCAACGGAGCTTCCAAAAAATTTCTTTCCGAGTTAATTTTCTCAGTTTTATTAAC
CCGGGCGGCTCTTTATTATTGCTTTAAATTTGTAGTTCTTGTTTCAAGTTAAAATTTTTAATTCTCTATTATTTTTATTATATTGATGCTTTATAACATT
GCCTTTTATGATGTAATTCATAGACCATACATAGTGGAATCCTATATCTTATTTATTTCCTCTTCCTTCTTTCTATCATCCCTCCCTTTATCCACATCCC
TTTAGTTTTGCTTCACAACCTAGAATCCCTTTTCTTTTTTAGAGAAAAAATTGCAGTTGCTACAACTATATGACACATCTACTCATTTATGATAGAGGTA
TTTATTCATATAGTGACTGTTTCTTAGTTAGGATCTCGACAATACGAAGCAATAGGTTGGTTATTAGTTAATTTTCTATAATTACTAAGTTTTTTTCTTA
AAAAAAAGAAAAAAATAACGAGTCACACACTAAGCATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTATAATTTCTT
CTTTTGCAGGGATTTCAGGAAAAAAGTCTCTTGTCATTTTT