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Detailed information on CNT30371107


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT001352, E-value = 6e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Oryza glumipatulaOryza sativa10010.199.76422forward
CNT30641762Oryza glumipatulaNymphaea colorata61.147.4381.01258forward
CNT30405603Oryza glumipatulaBeta vulgaris40.2822.2581.76170forward
CNT30196572Oryza glumipatulaPisum sativum31.7513.3582.09134forward
CNT30503443Oryza glumipatulaNicotiana attenuata45.0256.2182.11190forward
CNT3047594Oryza glumipatulaPrunus dulcis59.4835.7582.47251forward
CNT30185636Oryza glumipatulaSecale cereale10027.2391.71422forward
CNT30293259Oryza glumipatulaTriticum aestivum10029.9991.47422forward
CNT30224357Oryza glumipatulaHordeum vulgare10027.9591.47422forward
CNT3086712Oryza glumipatulaVigna radiata42.8960.7482.87181forward
CNT30555950Oryza glumipatulaOryza glaberrima10027.8599.76422forward
CNT30442098Oryza glumipatulaAegilops tauschii75.8348.3489.06320forward
CNT30257804Oryza glumipatulaAvena sativa100.9564.6491.78426forward
CNT30656274Oryza glumipatulaTriticum dicoccoides63.5153.8289.55268forward
CNT30311863Oryza glumipatulaCamelina sativa61.1415.881.78258forward
CNT3060130Oryza glumipatulaArabidopsis lyrata61.1428.1482.17258forward
CNT3083474Oryza glumipatulaBrassica juncea64.938.2182.12274forward
CNT30447455Oryza glumipatulaSaccharum spontaneum72.7542.7690.55307forward
CNT30134355Oryza glumipatulaLolium perenne79.8613.3891.1337forward
CNT30229832Oryza glumipatulaAnanas comosus78.228.0682.42330forward
CNT30655378Oryza glumipatulaRosa chinensis61.1417.3782.17258forward
CNT30689031Oryza glumipatulaTriticum urartu1007.5791.23422forward
CNT30357951Oryza glumipatulaLactuca sativa51.1822.9581.48216forward
CNT30411335Oryza glumipatulaPapaver somniferum25.8312.6382.57109forward
CNT30574575Oryza glumipatulaVitis vinifera25.367.0185.05107forward
CNT30585636Oryza glumipatulaEchinochloa crusgalli101.427.4689.25428forward
CNT30604454Oryza glumipatulaOryza punctata96.6865.0799.51408forward
CNT30557814Oryza glumipatulaPanicum hallii101.1841.389.7427forward

Expression of CNT30371107

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHSARAISFPARRPAIFTFTPFISVFLVNSMAFFIAFRNETLFFNWKAIYS

Sequence

>CNT30371107
CATAGCAATTTTATTAAAAGATTTCTCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTTTTTTTCAGGGATTTTAGGGAAAATAAGGCTC
TTGTCATTTTTTATTCTATTACTGAACAGAATGGGAAGACAGGGTTGGTTATTCTTCGTCTACGAATATCTAAATTTTAACTCCTAATACTCCATAGATA
GTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCTTTTTTGATGCATTCGGCACGCGCAATTTCTTTTCCCG
CGAGACGGCCTGCAATTTTTACTTTTACTCCCTTTATATCTGTTTTTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTCGGAATGAAACTCTATTTTT
TAATTGGAAAGCTATATATTCT