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Detailed information on CNT3083474


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLX1|RR3_NASOF, E-value = 1e-132

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690836Brassica junceaOryza sativa9.7945.185.93327forward
CNT30516020Brassica junceaJuglans regia3.3543.9284.82112reverse complement
CNT30405603Brassica junceaBeta vulgaris12.7355.6386.59425forward
CNT30196572Brassica junceaPisum sativum10.2734.1683.38343forward
CNT30503443Brassica junceaNicotiana attenuata9.4693.4986.08316forward
CNT3048583Brassica junceaPrunus dulcis11.560.8689.58384forward
CNT30294297Brassica junceaTriticum aestivum9.9165.2985.5331forward
CNT3086712Brassica junceaVigna radiata6.3270.8188.63211forward
CNT30541469Brassica junceaBrassica napus34.5375.3699.571153forward
CNT30237791Brassica junceaBrassica oleracea6.6893.795.52223forward
CNT30555950Brassica junceaOryza glaberrima9.7921.5885.93327forward
CNT30147499Brassica junceaMedicago truncatula11.1123.5484.1371forward
CNT30442098Brassica junceaAegilops tauschii9.915085.5331forward
CNT30243771Brassica junceaAvena sativa9.9128.7185.2331forward
CNT30656274Brassica junceaTriticum dicoccoides7.3449.287.35245forward
CNT30311863Brassica junceaCamelina sativa28.8759.0396.89964forward
CNT3060130Brassica junceaArabidopsis lyrata13.348.4295.95444forward
CNT30260256Brassica junceaBrassica rapa4.6753.7994.87156forward
CNT30598237Brassica junceaFraxinus excelsior3.682085.37123forward
CNT30447455Brassica junceaSaccharum spontaneum9.8545.8284.5329forward
CNT30229832Brassica junceaAnanas comosus19.5955.6182.42654forward
CNT30655378Brassica junceaRosa chinensis20.3745.7987.65680forward
CNT30679333Brassica junceaTriticum urartu9.9133.9585.5331forward
CNT30351320Brassica junceaEragrostis tef3.655082.79122forward
CNT30364284Brassica junceaSorghum bicolor1.7723.6991.5359reverse complement
CNT30620547Brassica junceaCajanus cajan4.7650.6486.79159forward
CNT30357951Brassica junceaLactuca sativa11.6241.2386.86388forward
CNT30371107Brassica junceaOryza glumipatula8.1564.4581.99272forward
CNT30411335Brassica junceaPapaver somniferum12.7649.3686.15426forward
CNT30574575Brassica junceaVitis vinifera12.8228.0589.25428forward
CNT3053857Brassica junceaAmborella trichopoda10.6328.3183.66355forward
CNT3025585Brassica junceaPopulus trichocarpa10.4883.1483.14350forward
CNT30576477Brassica junceaOryza barthii3.3524.488.39112forward
CNT30116873Brassica junceaOryza nivara4.5221.6684.11151forward
CNT30604560Brassica junceaOryza punctata8.5728.483.22286forward
CNT30336889Brassica junceaCynara cardunculus11.8646.2185.61396forward
CNT30724130Brassica junceaLupinus angustifolius5.5455.3986.49185forward

Expression of CNT3083474

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLSVMLVDPIRTVPFLFMSAFRIEVIISAIVSFPMIS*

>peptide 2 (42 aa)
MGLHYYMYRNMLDLCFHCCIQVFLNTLNILHIVDIRIYLPIR*

>peptide 3 (31 aa)
YFFISQEIYGYIHFMSKRTFFLLAPWKCLFL*

>peptide 4 (53 aa)
MTTAALSSYRIIVPFLRLSSLQVRTITALTTSDLSRVVFGIASLITATITSPI*

>peptide 5 (56 aa)
IFFHFTRNIWIYPFHVKTDLFFTSSLEVPFPLVRLSLSLFMPRVGTNYYNSSPPTD*

>peptide 6 (42 aa)
MLFSFFILYSYSEIMNWVFIGIFDAAIEIAFLAIFSGTPPIS*

>peptide 7 (46 aa)
MSIAAITSSYYSNTHQFSSPAVVCYIQIGLWLNHIFVSLLLVQRTK*

>peptide 8 (70 aa)
MLFTKFGSFWVIHSNYIKGVLMEMFIQPYRIAHFFFLNIKKKTTSFYFYFFIVLYYIVFVFYHWIKCKDK*

Sequence

>CNT3083474
ATATTTTTTCATTTCACAAGAAATATATGGATATATCCATTTCATGTCAAAACGGACCTTTTTTTTACTAGCTCCTTGGAAGTGCCTTTTCCTTTAGTAA
GATTATCCTTGTCTTTGTTTATGCCTCGGGTTGGAACAAATTACTATAATTCGTCCCCTCCTACGGATTAGCCGACACTTTTCACAAATTTTACGAACGG
AAGCCCTTATTTTCATAGTTGTTATTCCTTAATTCTCTTAATATACTTATTGTTGGACGAAAAAAAGGTTTCTTGATATTTTTGAATCTTGAATTGTATC
TTCGTGAAAGGAATGTTGAATTTCAAAAAACCACTGACTTATTTGAATCCTTGTTATGGAGTCTAGAAAGTGGCTGTTCCCCGATTAACTTAATACCTAA
GAACTTACTAAAATTTTTACCCCTTTTTCTCCTATAGGTATACCTATACAAAAATATGTCGAATCCTTTCAGAAGCATGACCTAAAATAAAAAAAATCTT
TAGTATCTAAACAAAATCGAACCATACCGTTCGGAAGTGATTCATAAAGAAAACTTTCATTAATTCATTTTTTTCTTTAATTTCATTCGGGGTAAAAAAT
TCTAAACTTTTTTAGCAGGGGTGGTATTACACAACCCCCCCCCTTTTTTTTCACAAATGCTAAGTTCCGGATATCCAATTTTGATATTAGAAGGATTACC
ATATATAACACAAAATTTCTCCGCCGATTCTTTTTAGTCGAGCTTCTCGATCTGTCATTATACCTTGAGAAGTTGAAAGGATTACAATTCCTATTCCGCC
TAAAATTCGTGGAATTCGTTGAGAGTTAGAATAGATTCGTAGACCCGGTCGGCTTATTCTCTTTAAATTTAAAATCGTTTTATAGGATTCTTTCTTATTT
CGTCTATGTCTTAGGGTTAAAATCAAAAAATATTGATTGTTTTCGCGATGTTTCCTTACGTTTTCGATAAAACCCTCTTGTAAAAGTATTTTAACAATGC
TTTCGGTGATGTTAGTCGATCCTATCCGAACTGTTCCTTTTCTATTCATGTCAGCATTTCGTATAGAGGTTATTATATCAGCAATAGTGTCTTTCCCCAT
GATAAGTTAAAATTCCTTAATTGTTCTATAATTTTGATATAATCAACATGTTATTTTTCTTTTATTTATATAAAAATAGAGACGAATTATATATTAATAT
ATGAATTCAATTATTAATATATAAAATTATTAAGGGTATATGCGTGATACACAATCTATTAATTATAATTAATTTGATTTCAATACCATTTTTTTAATCC
TATCCTATATTAACTATCGATATTTAGGTCTTATAATACTTCAGGAGCTAATGAAACTATTTTAGTAAAGTTTAATTGTCTCAATTCCCGTGGGATCGCC
CCAAAAACGCGAGTTCCTTTTGGATTTCCTTCTTGATCAATGACAACTGCGGCATTGTCGTCATATCGTATTATCGTCCCATTCTTACGTTTGAGTTCTT
TACAAGTACGTACAATTACAGCTCTGACCACTTCTGATCTTTCTAGAGTAGTATTTGGGATTGCTTCCTTGATTACAGCAACAATAACGTCACCAATATG
AGCATAGCGGCGATTACTAGCTCCTATTATTCGAATACACATCAATTTTCTAGCCCCGCTGTTGTCTGCTACATTCAAATAGGTTTGTGGTTGAATCATA
TTTTTGTATCTCTTCTTTTAGTGCAAAGGACGAAGTAAAAAAAATATTGTTTGTCAAAAAAAAACTTATAATCTTTTTATCCTTAAATGTTATTTAGCTT
TTTCATTCTATATTCCTATTCAGAAATAATGAATTGGGTTTTTATAGGCATTTTTGATGCCGCGATTGAAATAGCTTTTCTGGCTATATTTTCTGGTACA
CCACCCATTTCATAAAGGATTTTACCTGGTTTAACCACAGCTACCCAGTACTCTGGGGATCCTTTCCCAGAACCCATACGCGTTTCCGCGGGTCTTACTG
TAACTGGCTTGTCTGGAAATATACGTACCCAAATTTTTCCACCACGTCGTATATTTCGTGTCATTGCTCGTCGCCCTGCTTCTATTTGTCTAGATGTAAT
CCAAGCGGGTTCAAGTGTTTGAAGAGCATATCTGCCAAAACAAATACGATTCCCACGAGAGGATATTCCTTTTAGTCTTCCTCGATGTTGTTTACGAAAT
TTGGTTCTTTTTGGGTTATACATAGCAATTATATCAAAGGAGTTTTGATGGAAATGTTTATTCAACCTTATAGAATTGCTCATTTTTTTTTCTTAAACAT
AAAAAAAAAGACTACAAGTTTTTATTTTTATTTCTTTATAGTGTTATACTACATAGTTTTCGTTTTTTATCATTGGATAAAATGTAAAGACAAATAAAGT
TTTTTTATTCTTCGTCTACGAATATCCAAATTTTTATTCCTAAAACCCCATAAATAGTTCGAACTGTATAGGAACAATAATCAATTTTAGCTTCAATTGT
TTGTAAAGGAACTCTGCCTTCTCTGATCCATTCAACACGTGCAATTTCTTTTCCGTCGATACGTCCTGCAATTTGTACTTGAATTCCTTTTGTATTCGCC
TGTTCAGTTAATTCAATAGCTTTTTTCATTGCTTTTCGAAAAGAAACGCGATTTTTTAATTGGCCAGCTATAAATTCTGCAAGAATATTAGGATGCCCAT
ACGGATTGGAAATTCGGGTAATAGCAATGTTGAGTTTTCTATTGACACAATTAAGTTCTTTTTGAACATTCATCTGTAATTCTTCGATTCTTCGGGGTTT
ATCTTCAATTAATAATTTAGGAAATCCCATATAGATTATGATCTGAATGAGATCGATTCTTTTTTGAATTTCGATACGTGCAATTCCCTCCATACCAGAG
GATATTCTTATATTTTTTTGGACATAATTTTTAATACAGTCTCGTATTTTTTTATCTTCTTCTAAACCTTCAGAATACTTTTTTGGTTGTGCAAACCAAA
TAGAATGATGACTTTGGGTTGTACCAAGTCTGAAACCAAGTGGATTTATTTTTTGTCCCATGGGCCTCCACTACTATATGTATCGTAACATGTTAGATTT
ATGTTTTCATTGCTGCATCCAGGTTTTTTTAAATACATTAAATATTCTTCATATTGTTGATATAAGGATATATCTTCCAATACGATAGTTATATGACAAG
TGGATCTTTTTATTGGGTAACTCCGTCCTCGTGCCCGAGGTTTTAATTTTTTCACCGTATTTCCTTGATTCACTTCAGCTTTACTAATGACTAAATTGGT
TTCTTTGAAACCCTTATTGTGACTAGCATTTGCTGCTGG