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Detailed information on CNT30555950


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C443|RK16_ORYSJ, E-value = 2e-91

BLAST vs NONCODE:
NONCSAT000320, E-value = 1e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Oryza glaberrimaOryza sativa58.8821.34100892forward
CNT30641762Oryza glaberrimaNymphaea colorata23.110.0887.71350forward
CNT30550215Oryza glaberrimaIpomoea triloba25.158.3285.3381forward
CNT30405603Oryza glaberrimaBeta vulgaris22.6444.989.5343forward
CNT30196572Oryza glaberrimaPisum sativum21.4532.3782.15325forward
CNT30503443Oryza glaberrimaNicotiana attenuata15.4569.2382.05234forward
CNT3048584Oryza glaberrimaPrunus dulcis14.1966.7786.98215forward
CNT30185636Oryza glaberrimaSecale cereale45.2144.1992.99685forward
CNT30293259Oryza glaberrimaTriticum aestivum58.8163.3392.26891forward
CNT3086712Oryza glaberrimaVigna radiata14.6574.582.88222forward
CNT30540371Oryza glaberrimaBrassica napus21.5854.1485.93327forward
CNT30147499Oryza glaberrimaMedicago truncatula25.2124.2480.89382forward
CNT30442098Oryza glaberrimaAegilops tauschii43.96100.692.04666forward
CNT30243771Oryza glaberrimaAvena sativa51.6267.8292.46782forward
CNT30656274Oryza glaberrimaTriticum dicoccoides32.8710092.37498forward
CNT30310337Oryza glaberrimaCamelina sativa22.6420.5384.84343forward
CNT3060130Oryza glaberrimaArabidopsis lyrata24.6240.6884.99373forward
CNT3083474Oryza glaberrimaBrassica juncea21.589.7985.93327forward
CNT30598237Oryza glaberrimaFraxinus excelsior14.6536.181.98222forward
CNT30447455Oryza glaberrimaSaccharum spontaneum47.1399.4492.44714forward
CNT30134355Oryza glaberrimaLolium perenne34.1920.5791.89518forward
CNT30229832Oryza glaberrimaAnanas comosus25.2132.4886.39382forward
CNT30655378Oryza glaberrimaRosa chinensis22.8423.389.02346forward
CNT30689030Oryza glaberrimaTriticum urartu58.8119.6892.59891forward
CNT30357951Oryza glaberrimaLactuca sativa26.6742.9386.88404forward
CNT30371107Oryza glaberrimaOryza glumipatula27.8510099.76422forward
CNT30411335Oryza glaberrimaPapaver somniferum26.3446.2388.72399forward
CNT30574575Oryza glaberrimaVitis vinifera26.3426.1588.22399forward
CNT3053857Oryza glaberrimaAmborella trichopoda23.6328.5582.4358forward
CNT30585636Oryza glaberrimaEchinochloa crusgalli38.9410.2896.27590forward
CNT30116873Oryza glaberrimaOryza nivara13.2728.8499.5201forward
CNT30557814Oryza glaberrimaPanicum hallii42.5162.2890.84644forward
CNT30550799Oryza glaberrimaOryza brachyantha23.5626.593.28357forward
CNT30336889Oryza glaberrimaCynara cardunculus22.940.4987.03347forward
CNT30724130Oryza glaberrimaLupinus angustifolius7.9235.9389.17120forward

Expression of CNT30555950

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQKDERNIVFPERRTWFFIFNTTFLGGLYF*

>peptide 2 (30 aa)
MFSFFFSFWILKHIRETQSTNFLFDLYLVY*

>peptide 3 (58 aa)
MHSARAISFPARRPAIFTFTPFISVFLVNSMAFFIAFRNETLFFNWKAIYSARMLGCL*

>peptide 4 (31 aa)
MKEILSFQKEEPGFLFSILLFWGGYISNRRN*

Sequence

>CNT30555950
CATAAGACTCTAATTCTAGGTTCCTCCTAATTTTTCTATAATCAACATGTTCTCTTTTTTCTTTTCGTTTTGGATTCTAAAGCATATACGTGAAACACAA
TCTACTAATTTTTTATTTGATCTATATCTTGTCTACTAGTATTTATAATACTTCAGGAGCTAATGAAACTATTTTAGTAAAATTCAATTCTCTCAATTCC
TCGGCGATCGCGCCAAAAACGCGAGTTCCTTTTGGATTTCCTTTTTGATCAATGATAACCGCTGCATTGTCGTCATAGCGTATTATTATACCGTCTTCGC
ATTTGAACTCTTTACATGTACGTACAATTACAGCTCGAATTACTTCGGATCTTTCTAGAGGCATTTGGGGCACTGCGTCTTTGATTACAGCAACAATAAC
ATCACCAATACGAGCATATCGCTGATTACTAGCAGCTCCTATGACTCGAATACACATCAATTTTCGAGCTCCACTGTTATCTGCTACATTTAAAAGGGTC
TGAGGTTGAATCATATTATTTTGATTTCAATTTGTTATTTCAATGCAAAAGGATGAAAGAAATATTGTCTTTCCAGAAAGAAGAACCTGGTTTTTTATTT
TCAATACTACTTTTTTGGGGGGGTTATATTTCTAACCGAAGAAATTGACTTCGTATGGGCATTTTGCTGGCAGCTATGGAAATAGCTGCTCTAGCTACAG
TTTCGGATACTCCGCCCATTTCATAAAGTATTCGACCTGGTTTAACAACGGCTACCCAATATTCGGGGGATCCCTTTCCCGAACCCATACGTGTTTCGGT
CGGTCTTATTGTAACCGGTTTGTCGGGAAATATACGTACCCAGATTTTTCCACCACGACGTGCATATCGTGTCATTGCTCTTCGTCCTGCTTCTATCTGC
CTCGCCGTAATCCAAGTGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACAATTGCCTCGGTAGGATTTTCCCTTCATTCTTCCTCTATGTT
GTTTACGAAATCTGGTTCTTTTGGGGTTATACATAGCAATTTTATTAAAAGATTTCTCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTT
TTTTTCAGGGATTTTAGGGAAAATAAGGCTCTTGTCATTTTTTATTCTATTACTGAACAGAATGGGAAGACAGGGTTGGTTATTCTTCGTCTACGAATAT
CCAAATTTTAACTCCTAATACTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACCTTTTTTG
ATGCATTCGGCACGCGCAATTTCTTTTCCCGCGAGACGGCCTGCAATTTTTACTTTTACTCCCTTTATATCTGTTTTTTTAGTTAATTCAATGGCTTTTT
TCATTGCCTTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGTTGTCTATAAGGTTCTTTCACTTTTTCGATCCC
AATATTAAGTCTCTG