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Detailed information on CNT30442098


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H50|RK16_WHEAT, E-value = 5e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Aegilops tauschiiOryza sativa100.615.9392.04666forward
CNT30641762Aegilops tauschiiNymphaea colorata51.969.9188.66344forward
CNT30405603Aegilops tauschiiBeta vulgaris50.1543.4688.86332forward
CNT30196572Aegilops tauschiiPisum sativum45.4729.9882.72301forward
CNT30503443Aegilops tauschiiNicotiana attenuata15.4130.1882.35102forward
CNT3048584Aegilops tauschiiPrunus dulcis32.4866.7788.37215forward
CNT30185636Aegilops tauschiiSecale cereale84.1435.9499.28557forward
CNT30294378Aegilops tauschiiTriticum aestivum10032.4499.7662forward
CNT30224357Aegilops tauschiiHordeum vulgare47.7320.9396.84316forward
CNT30540371Aegilops tauschiiBrassica napus5054.885.5331forward
CNT30555950Aegilops tauschiiOryza glaberrima100.643.9692.04666forward
CNT30243771Aegilops tauschiiAvena sativa100.9157.9495.51668forward
CNT30656274Aegilops tauschiiTriticum dicoccoides75.2310099.2498forward
CNT30311863Aegilops tauschiiCamelina sativa38.2215.4987.75253forward
CNT3060130Aegilops tauschiiArabidopsis lyrata43.6631.5287.2289forward
CNT3083474Aegilops tauschiiBrassica juncea509.9185.5331forward
CNT30598237Aegilops tauschiiFraxinus excelsior20.0921.6385.71133forward
CNT30447455Aegilops tauschiiSaccharum spontaneum97.2889.6991.61644forward
CNT30134355Aegilops tauschiiLolium perenne62.9916.5696.16417forward
CNT30229832Aegilops tauschiiAnanas comosus54.2330.5387.47359forward
CNT30655378Aegilops tauschiiRosa chinensis55.2924.6588.25366forward
CNT30689030Aegilops tauschiiTriticum urartu10014.62100662forward
CNT30620547Aegilops tauschiiCajanus cajan22.6647.7787.33150forward
CNT30357951Aegilops tauschiiLactuca sativa52.4236.8887.32347forward
CNT30371107Aegilops tauschiiOryza glumipatula48.3475.8389.06320forward
CNT30411335Aegilops tauschiiPapaver somniferum53.7841.2590.17356forward
CNT30574575Aegilops tauschiiVitis vinifera54.6823.7287.85362forward
CNT30585636Aegilops tauschiiEchinochloa crusgalli52.276.0395.09346forward
CNT30604550Aegilops tauschiiOryza punctata72.3621.8690.19479forward
CNT30557814Aegilops tauschiiPanicum hallii72.0546.1390.78477forward
CNT30550799Aegilops tauschiiOryza brachyantha44.5621.991.19295forward
CNT30336889Aegilops tauschiiCynara cardunculus52.4240.4985.88347forward
CNT30724130Aegilops tauschiiLupinus angustifolius23.1145.8187.58153forward

Expression of CNT30442098

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MIYQFSLNLIERGIISSFAGISGKKSLVIFYSINGQNPKTRLLILRLRISKFLHLILHR*

>peptide 2 (40 aa)
CSSYSFRYSPHFIKYTTRFNNGYPIFGGPLSRAHTCFRGS*

Sequence

>CNT30442098
CTGCTCTAGCTACAGTTTCAGATACTCCCCCCATTTCATAAAGTATACGACCAGGTTTAACAACGGATACCCAATATTCGGGGGACCCCTTTCCCGAGCC
CATACGTGTTTCCGTGGGTCTTAGTGTAACCGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACCACGACGTGCATATCGTGTTATTGCTCTTCGT
CCTGCTTCTATCTGTCTCGCCGTGATCCAAGCGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACGATTGCCTCGGCAGGATTTTCCTTTCA
TTCTTCCTCTATGTTGTTTGCGAAATCTGGTTCTTTTGGGGTTATACATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAG
GTATAATTTCTTCTTTTGCAGGGATTTCAGGAAAAAAGTCTCTTGTCATTTTTTATTCTATCAATGGACAGAATCCGAAGACAAGATTACTTATTCTTCG
TCTACGAATATCCAAATTTTTACACCTAATACTCCATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTC
TACCCTTTTTAATAGATTCGGCGCGTGCAATTTCTTTTCCTCCGAGACGACCCGCAATTTTT