Detailed information on CNT3047594


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL57|RR3_DRANE, E-value = 1e-71

BLAST vs NONCODE:
NONCSAT001352, E-value = 2e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196572Prunus dulcisPisum sativum32.3422.6189.43227forward
CNT30224357Prunus dulcisHordeum vulgare39.1718.2180.36275forward
CNT3086712Prunus dulcisVigna radiata30.4871.8193.93214forward
CNT30257804Prunus dulcisAvena sativa35.7538.0980.88251forward
CNT30713541Prunus dulcisMalus domestica golden10.8335.3597.3776reverse complement
CNT30357951Prunus dulcisLactuca sativa37.1827.7491.19261forward
CNT30371107Prunus dulcisOryza glumipatula35.7559.4882.47251forward
CNT30705533Prunus dulcisPrunus avium25.9321.1698.9182reverse complement
CNT30604560Prunus dulcisOryza punctata39.1727.3182.18275forward

Expression of CNT3047594

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LVPYIQIMRSDELIISSIVISSYYGPVDFVESYNPKKTNESHTKHSNYIKRLIEFLFNLIELLIFFXXFI*

Sequence

>CNT3047594
CTGGTTCCTTATATCCAGATAATGCGAAGCGATGAGTTGATTATTAGTTCTATAGTTATCAGTTCGTACTACGGGCCGGTCGATTTTGTTGAATCCTATA
ATCCTAAAAAAACCAACGAGTCACACACTAAGCATAGCAATTATATCAAACGATTAATCGAATTTTTATTCAACCTTATAGAATTGTTAATTTTTTTTTT
NNNTTTTATTTAACAGAAAAGGAATGAAAGAGTTTGCCTTTTTTGTTTTATCAACAGATAGAACTAAATACAAGTAAAGTAAGTTCTTATTATNTCCTCG
TCTACAAATATCCAAATTTTGATGCCTAATACCCCATAGATAGTTCGAACTGCGTAGGCACAATAATCAATTTTAGCTCGAATGGTTTGTAGAGGAACCC
TACCTTCTCTGATCCATTCAACACGTGCAATTTCTTTTCCGTCGATACGCCCTGCAATTTGTACTTGAATTCCTTTTGTACCTGCCTGTTCAGTTAATTC
AATAGCTTTTTTCATTGCTTTGCGAAATGAAACTCTATTCTTTAATTGTCCGGCTATAAATTCTGCAAGAATATTGGGGTGCCCATAGGGATTTGAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTTTGTACATTCATCTGTAATTCTTCGATTCTTCTAGTCCTGTCTTCTATTAATAACT
TG