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Detailed information on CNT30185636


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H49|RR3_WHEAT, E-value = 2e-89

BLAST vs NONCODE:
NONORUT000960, E-value = 3e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694723Secale cerealeOryza sativa52.5817.9893.01815forward
CNT30405603Secale cerealeBeta vulgaris16.5833.6489.49257forward
CNT30196572Secale cerealePisum sativum15.9424.681.78247forward
CNT30503443Secale cerealeNicotiana attenuata15.169.2381.2234forward
CNT3048584Secale cerealePrunus dulcis13.8766.7787.91215forward
CNT30293259Secale cerealeTriticum aestivum51.156.2998.61792forward
CNT30224357Secale cerealeHordeum vulgare45.0346.2398.28698forward
CNT3086712Secale cerealeVigna radiata14.3274.581.08222forward
CNT30540371Secale cerealeBrassica napus16.3241.8987.35253forward
CNT30555950Secale cerealeOryza glaberrima44.1945.2192.99685forward
CNT30442098Secale cerealeAegilops tauschii35.9484.1499.28557forward
CNT30243771Secale cerealeAvena sativa39.4853.0895.75612forward
CNT30656274Secale cerealeTriticum dicoccoides32.1310098.59498forward
CNT3060130Secale cerealeArabidopsis lyrata16.0627.1587.55249forward
CNT30598237Secale cerealeFraxinus excelsior8.5821.6384.96133forward
CNT30447455Secale cerealeSaccharum spontaneum34.7775.0791.28539forward
CNT30134355Secale cerealeLolium perenne28.7717.7193.95446forward
CNT3018340Secale cerealeZea mays20.3923.7292.41316forward
CNT30229832Secale cerealeAnanas comosus16.3921.687.4254forward
CNT30713541Secale cerealeMalus domestica golden4.4532.0991.369reverse complement
CNT30689031Secale cerealeTriticum urartu52.3214.5499.01811forward
CNT30620547Secale cerealeCajanus cajan9.6847.7786.67150forward
CNT30357951Secale cerealeLactuca sativa17.0328.0687.12264forward
CNT30371107Secale cerealeOryza glumipatula27.2310091.71422forward
CNT30411335Secale cerealePapaver somniferum16.2629.290.48252forward
CNT30585636Secale cerealeEchinochloa crusgalli44.1911.9390.07685forward
CNT30604560Secale cerealeOryza punctata45.169.4193.56699forward
CNT30557814Secale cerealePanicum hallii38.958.3291.04603forward
CNT30336889Secale cerealeCynara cardunculus17.0330.8186.36264forward
CNT30724130Secale cerealeLupinus angustifolius9.8745.8186.93153forward

Expression of CNT30185636

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MIYQFSLNLIERGIISYFAGISGKKSLVIFYSINGQNPKTRLVILRLRISKFLHLILHR*

>peptide 2 (59 aa)
MIYQFSLNLIERGIISSFAGISGKKSLVIFYSINGQNPKTRLVILRLRISKFLHLILHR*

>peptide 3 (58 aa)
MDSARAISFPPRRPAIFTFTPLISAFLVNSMAFFIAFRNETLFFNWKAIYSARMLGCL*

>peptide 4 (47 aa)
CVSVGLSVTGLSGNIRTHIFPPRRAYRVIALRPASICLAVTQAGSSA*

>peptide 5 (63 aa)
MDSARAISFPPRRPAIFTFTPLISAFLVNSMAFFIAFRNETLFFNWKAIYSARMLGCLLVNFL*

Sequence

>CNT30185636
TGTGTTTCCGTGGGTCTTAGTGTAACCGGTTTGTCGGGAAATATACGTACCCATATTTTTCCACCACGACGTGCATATCGTGTTATTGCTCTTCGTCCTG
CTTCTATCTGTCTCGCCGTGACCCAAGCGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACGATTGCCTCGGCAGGATTTTCCTTTCATTCT
TCCTCTATGTTGTTTGCGAAATCTGGTTCTTTTGGGGTTATACATAGCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTAT
AATTTCTTATTTTGCAGGGATTTCAGGAAAAAAGTCTCTTGTCATTTTTTATTCTATCAATGGACAGAATCCGAAGACAAGATTAGTTATTCTTCGTCTA
CGAATATCCAAATTTTTACACCTAATACTCCATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGGAGGGGAAGTCTACC
CTTTTTAATGGATTCGGCGCGTGCAATTTCTTTTCCTCCGAGACGACCCGCAATTTTTACTTTTACTCCCCTTATATCTGCTTTTTTAGTTAATTCAATG
GCTTTTTTCATTGCCTTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGTTGTCTATTAGTTAATTTTCTATAAT
TACTAAGTTTTTTTCTTAAAAAAAAGAAAAAAGAAAAAAATAACGAGTCACACACTAAGCATAGCAATTATATTAAATGATTTATCAATTTTCATTAAAT
CTTATAGAAAGAGGTATAATTTCTTCTTTTGCAGGGATTTCAGGAAAAAAGTCTCTTGTCATTTTTTATTCTATCAATGGACAGAATCCGAAGACAAGAT
TAGTTATTCTTCGTCTACGAATATCCAAATTTTTACACCTAATACTCCATAGATAGTCCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTT
TGGAGGGGAAGTCTACCCTTTTTAATGGATTCGGCGCGTGCAATTTCTTTTCCTCCGAGACGACCCGCAATTTTTACTTTTACTCCCCTTATATCTGCTT
TTTTAGTTAATTCAATGGCTTTTTTCATTGCCTTTCGGAATGAAACTCTATTTTTTAATTGGAAAGCTATATATTCTGCAAGAATGTTAGGCTGTCTATA
AGGTTCTTTAACTTTTTCGATAGAAATATTAAATCTCTAGTTTACAGAGTTAATTTCCTTTTGTAGATCTTTCTCTAATTCTTCGATTGCTCCTTTTTTT
TTAATAAATTTGGGAATCCAATATGGATTATGACATGGATCGTATCGATTTCTTTTTGAATTTCTATATGTGTAATTACTTCGGAACTTGAACCTGAGTC
CATTTTTCTATTATGTGTAATTACTTCGGAACTTGAGTCTGATTCTATTTTTCTATTCGAGCCCTTTTTCCTATTCTTTTGTATATAGTTCTTGATACAA
TCCCTTATTTTTTTTATCTTCCTGTAGACCTTCAGAATAATTTTTTGGTT