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Detailed information on CNT30229832


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAJ8|RR3_PHAAO, E-value = 3e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641762Ananas comosusNymphaea colorata53.8318.2484.68633forward
CNT30405603Ananas comosusBeta vulgaris27.6442.5487.69325forward
CNT30196572Ananas comosusPisum sativum25.5129.8881.67300forward
CNT30503443Ananas comosusNicotiana attenuata25.4388.4686.29299forward
CNT3048583Ananas comosusPrunus dulcis32.9161.3383.46387forward
CNT30637715Ananas comosusCapsicum annuum5.721.295.5267reverse complement
CNT30185636Ananas comosusSecale cereale21.616.3987.4254forward
CNT30294378Ananas comosusTriticum aestivum30.8717.7987.6363forward
CNT30224357Ananas comosusHordeum vulgare42.633.1880.24501forward
CNT3086712Ananas comosusVigna radiata17.0167.1188200forward
CNT30540371Ananas comosusBrassica napus29.0856.6285.09342forward
CNT30555950Ananas comosusOryza glaberrima32.4825.2186.39382forward
CNT30442098Ananas comosusAegilops tauschii30.5354.2387.47359forward
CNT30243771Ananas comosusAvena sativa30.8731.4886.5363forward
CNT30656274Ananas comosusTriticum dicoccoides18.6243.9889.04219forward
CNT30311863Ananas comosusCamelina sativa55.6140.0582.26654forward
CNT3060130Ananas comosusArabidopsis lyrata24.5731.5287.2289forward
CNT3083474Ananas comosusBrassica juncea55.6119.5982.57654forward
CNT30447455Ananas comosusSaccharum spontaneum30.8750.5685.67363forward
CNT30134355Ananas comosusLolium perenne31.8914.8985.6375forward
CNT30655378Ananas comosusRosa chinensis55.6144.0483.03654forward
CNT30620547Ananas comosusCajanus cajan12.1645.5490.21143forward
CNT30357951Ananas comosusLactuca sativa28.8336.0387.32339forward
CNT30371107Ananas comosusOryza glumipatula28.0678.282.42330forward
CNT30411335Ananas comosusPapaver somniferum31.2942.6488.59368forward
CNT30574575Ananas comosusVitis vinifera30.9523.8587.64364forward
CNT3025585Ananas comosusPopulus trichocarpa23.1364.6183.09272forward
CNT30604560Ananas comosusOryza punctata34.2740.0282.88403forward
CNT30550799Ananas comosusOryza brachyantha20.8318.1984.08245forward
CNT30336889Ananas comosusCynara cardunculus28.438.9786.23334forward
CNT30724130Ananas comosusLupinus angustifolius13.0145.8188.24153forward

Expression of CNT30229832

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMEFVIFCFITGQNGKTGSIISCLQISKFLYLLLHK*

>peptide 2 (36 aa)
MGRQGRLFLVYKYPNFYTYYSINSSNCIGTMINFSA*

Sequence

>CNT30229832
CATTTTGCGCGCAGCTATCTCAATAGCTGCTCTAGCTACAGTATCTGATACTCCACCTATTTCGTAAAGTATTCGACCCCGTTTAACAACAAATACCCAA
TATTCAGGGGATCCCTTCCCCGAACCCATACGTGTTTCCGCGGGTCTTACTGTTACAGGTTTTCTTGGAAATATACGTACCCATATTTTTCCACCACGAC
GCACATATCATTTCATTGCTCTTTGCCCTGCTTCTATTTGTCTAGCTGTAATCCAAGCAGGTTCAAGTGCCTTAAGAGCGTATCTGCCGAAACAAATATC
ATTGCCTCGACAAGATATTCCTTTCATTCTTCCTCTATGTTGTTTACGAAATCTGGTTCTTTTGGGGTTATACATAGCAATTATACCAATGATCAATCAA
ATTTTATTTAACCTATTAGAATTGTTCTTTTTTTAACGGAAAAAGAATGATGGAGTTTGTCATTTTTTGTTTTATCACTGGACAGAATGGGAAGACAGGG
TCGATTATTTCTTGTCTACAAATATCCAAATTTTTATACCTACTACTCCATAAATAGTTCGAATTGTATAGGAACAATGATCAATTTTAGCGCTTGATCG
CGAATTGTTTGTAAGGGAACTCTACCCTCTCTAATCCATTTGCCACATGCAATTTCTTTTCCGTCGATACGGCCTGCTATTTGCACTTGAATTCCCTTTG
TATCCGTTTGTTCAGTTAATTCAATAGCTTTTTTCATTGCTTTTCGAAACGAAACTCTATTTTTTAATTGTAAAGCTATATATTCTGCAAGAATATTAGG
TTGTCCATAAGGTTTTTCAACTCTTGTGATAGCAATGTTGAGTCTCCGGTTTACAGAATGAAACTCCTTTTGTACATTCATCTGTAATTCTTTGATTCCT
CGTGTTTGCCCCTCTATTAATAATTTGGGAATCCAATATAGATTATGACTTGGATCAAATTGATATTTTTTTGAATTGTTATACATGCAATTCCCTCGAA
ACCTGAGGATATTTTTCTATTTTTTTGTACATAGTTCTTGATACAATTCCATATTATTTTCATCTTCCTGTAGACCCACGGAATAATTTTTTGGTTGTGT
GAACCAAAAGGAATGATGACTTTTTGTTGTACCAAGTCTTAAACCAAGTGGATTCATTTTTTGTCCTATATTTTTC