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Detailed information on CNT30655378


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL57|RR3_DRANE, E-value = 4e-140

BLAST vs NONCODE:
NONCSAT001352, E-value = 1e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690836Rosa chinensisOryza sativa27.7456.8386.89412forward
CNT30641762Rosa chinensisNymphaea colorata42.0217.9883.17624forward
CNT30516020Rosa chinensisJuglans regia8.8951.7687.88132reverse complement
CNT30405603Rosa chinensisBeta vulgaris32.1262.4390.78477forward
CNT30196572Rosa chinensisPisum sativum21.7532.1787.31323forward
CNT30503443Rosa chinensisNicotiana attenuata19.6686.3990.41292forward
CNT3048583Rosa chinensisPrunus dulcis30.371.3293.56450forward
CNT30637715Rosa chinensisCapsicum annuum4.5121.297.0167reverse complement
CNT30294378Rosa chinensisTriticum aestivum24.6517.9388.25366forward
CNT3086712Rosa chinensisVigna radiata14.2871.1491.51212forward
CNT30540371Rosa chinensisBrassica napus31.3176.9987.1465forward
CNT30555950Rosa chinensisOryza glaberrima23.322.8489.02346forward
CNT30442098Rosa chinensisAegilops tauschii24.6555.2988.25366forward
CNT30243771Rosa chinensisAvena sativa22.7629.3188.17338forward
CNT30656274Rosa chinensisTriticum dicoccoides18.9256.4388.97281forward
CNT30311863Rosa chinensisCamelina sativa45.7941.6487.5680forward
CNT3060130Rosa chinensisArabidopsis lyrata26.6743.1889.14396forward
CNT3083474Rosa chinensisBrassica juncea45.9320.4387.68682forward
CNT30598237Rosa chinensisFraxinus excelsior15.0236.2682.96223forward
CNT30447455Rosa chinensisSaccharum spontaneum23.348.1988.15346forward
CNT30134355Rosa chinensisLolium perenne24.6514.5486.61366forward
CNT30229832Rosa chinensisAnanas comosus44.0455.6183.03654forward
CNT30717952Rosa chinensisMalus domestica golden5.0520.8993.3375forward
CNT30689030Rosa chinensisTriticum urartu24.658.0888.25366forward
CNT30620547Rosa chinensisCajanus cajan10.7150.6490.57159forward
CNT30357951Rosa chinensisLactuca sativa29.9747.2991.46445forward
CNT30371107Rosa chinensisOryza glumipatula17.3761.1482.17258forward
CNT30411335Rosa chinensisPapaver somniferum29.8351.3388.04443forward
CNT30574575Rosa chinensisVitis vinifera30.9830.1493.7460forward
CNT3025585Rosa chinensisPopulus trichocarpa25.3289.3186.97376forward
CNT30585636Rosa chinensisEchinochloa crusgalli21.755.6388.54323forward
CNT30604560Rosa chinensisOryza punctata17.3725.6282.17258forward
CNT30336889Rosa chinensisCynara cardunculus29.9751.9389.44445forward
CNT30724130Rosa chinensisLupinus angustifolius12.5355.6991.94186forward

Expression of CNT30655378

Peptides detected in this lncRNA

>peptide 1 (64 aa)
CYPLRSNGFEVESYLFFIGFVFFNVKGEKKKKYCLFKTKQETYNCFLSKKFFPFVLHSYPIPKE*

>peptide 2 (35 aa)
MLSFRFTQLSSFCTLNCNSSILRVLSSINNLGNPI*

Sequence

>CNT30655378
GCTGTTATCCGCTACGTTCAAATGGGTTTGAGGTTGAATCATATCTTTTTTTTATTGGTTTTGTCTTTTTCAATGTAAAGGGTGAAAAAAAAAAGAAATA
TTGTTTGTTCAAAACAAAACAAGAAACCTACAATTGTTTTTTATCAAAAAAATTCTTTCCTTTTGTTCTACATTCCTATCCTATACCGAAAGAATGAATT
GAGTTCGTATAGGCATTTTTGATGCCGCTATTGAAATAGCCCTTCTGGCTATATTTTCTGCCACTCCGCTCATTTCATAAAGTATTCTGCCGGGTTTAAC
AACAGCTACCCAATATTCGGGAGATCCTTTCCCCGAACCCATACGTGTTTCTGTAGGTCTTACTGTAACTGGTTTGTCTGGAAATATACGTACCCAGATT
TTTCCACCGCGGCGTGCATTTCGTGTCATTGCTCGCCGCCCCGCTTCTATTTGTCTAGACGTGATCCAAGCGGGTTCAAGTGCTTGAAGAGCATATCTAC
CAAAGCAAATACGATTACCTCGATAAGACATTCCTTTCATTCTTCCTCTATGTTGTTTACGGAATCTGGTTCTTTTGGGGTTATACATAGCAATTATATC
AAATGATTAATCGAATTTTTATTCAACCTTATAGAATTGTTCATTTTTTTTATCACTAAATAGAAATAGAATTAAATACAAGTCAAGTAAATGCTTATTA
TTCTTCGTCTACAAATATCCAAATTTTGATACCTAATACCCCATAGATAGTTCGAACTGCGTAGGAACAATAATCTATTTTGGCTCGAATGGTTTGTAGA
GGAACCCTGCCTTCTCTGATCCATTCGACACGTGCAATTTCTTTTCCGTCGATACGCCCTGCAATTTGTACTTGAATTCCTTTTGTACCTGCCTGCTCAG
TTAATTCAATAGCCTTTTTCATTGCTTTGCGAAATGAAACTCTATTTTTTAATTGTCCGGCTATAAATTCCGCAAGAATATTGGGGTGCCCATAAGGGTT
TACAATTCTTGTAATAGCAATGTTGAGTTTTCGGTTTACACAATTGAGTTCTTTTTGTACATTGAACTGTAATTCTTCGATTTTGCGAGTCCTGTCTTCT
ATTAATAACTTGGGGAATCCCATATAGATTATGACTTGAATCAAATCGATTCTTTTTTGAATCTCTATACGTGCAATTCCCTCGACATTAGAGGATATTT
TCAGATTTTTTTGTACATAATTTTTGATACAATCTCGTATTTTTTGATCTTCTTGTAGATCCTCGGAATAATTTTTTGGTTGTGCAAACCAAAGAGAATG
ATGACTTTGGGTTGCACCAAGTCTGAAACCAAGTGGATTTATTTTTTGTCCCATAGTCCCCCACTACTATATATATCGTGAAACGTCATATCGGTGTATT
TTTTTTTTTTTTTTTATCCGTTCGGTTTTTTTTAAGCATAACATAATATAGCGTATTTGTAGTTTTTCTAATATAGAATATTCTT