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Detailed information on CNT30447455


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3G1|RK16_SACHY, E-value = 4e-90

BLAST vs NONCODE:
NONCQUT006130, E-value = 2e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Saccharum spontaneumOryza sativa99.4417.0892.3714forward
CNT30641762Saccharum spontaneumNymphaea colorata48.7510.0886.57350forward
CNT30405603Saccharum spontaneumBeta vulgaris47.7744.988.92343forward
CNT30196572Saccharum spontaneumPisum sativum44.9932.1781.11323forward
CNT30503443Saccharum spontaneumNicotiana attenuata11.4224.2684.1582forward
CNT3048584Saccharum spontaneumPrunus dulcis44.4399.0784.01319forward
CNT30185636Saccharum spontaneumSecale cereale75.0734.7791.28539forward
CNT30293259Saccharum spontaneumTriticum aestivum99.0350.5392.41711forward
CNT30224357Saccharum spontaneumHordeum vulgare41.519.7488.93298forward
CNT30540371Saccharum spontaneumBrassica napus45.8254.4784.5329forward
CNT30555950Saccharum spontaneumOryza glaberrima99.4447.1392.3714forward
CNT30442098Saccharum spontaneumAegilops tauschii89.6997.2891.61644forward
CNT30243771Saccharum spontaneumAvena sativa99.7262.191.62716forward
CNT30656274Saccharum spontaneumTriticum dicoccoides69.64100.491.4500forward
CNT30311863Saccharum spontaneumCamelina sativa33.9814.9486.07244forward
CNT3060130Saccharum spontaneumArabidopsis lyrata42.7633.4885.02307forward
CNT3083474Saccharum spontaneumBrassica juncea45.829.8584.5329forward
CNT30598237Saccharum spontaneumFraxinus excelsior29.8134.881.31214forward
CNT30134355Saccharum spontaneumLolium perenne65.1818.5991.88468forward
CNT30229832Saccharum spontaneumAnanas comosus50.5630.8785.67363forward
CNT30655378Saccharum spontaneumRosa chinensis48.1923.388.15346forward
CNT30689030Saccharum spontaneumTriticum urartu99.0315.792.12711forward
CNT30620547Saccharum spontaneumCajanus cajan16.9938.8588.52122forward
CNT30357951Saccharum spontaneumLactuca sativa48.4736.9888.79348forward
CNT30371107Saccharum spontaneumOryza glumipatula42.7672.7590.55307forward
CNT30411335Saccharum spontaneumPapaver somniferum55.9946.5887.81402forward
CNT30574575Saccharum spontaneumVitis vinifera56.1326.4186.85403forward
CNT30604550Saccharum spontaneumOryza punctata66.7121.8689.56479forward
CNT30550799Saccharum spontaneumOryza brachyantha49.5826.4390.45356forward
CNT30336889Saccharum spontaneumCynara cardunculus48.4740.6187.93348forward
CNT30724130Saccharum spontaneumLupinus angustifolius18.840.4288.15135forward

Expression of CNT30447455

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIALVGFSIHSSSMLFTKSSSFGVIHSNYIKRFINFH*

Sequence

>CNT30447455
GGGTTCTATATCTCTAATCGAAGAAATTGACTTCGTATGGGCATTTTACTGGCAGCTATAGAGATAGCTGCTCTAGCTACAGTTTCAGATACTCCGCTCA
TTTCATAAAGTATTCGACCTGGTTTAACAACGGCTACCCAATATTCGGGGGATCCCTTTACCGAGCCCATACGTGTTTCTGTGGGTCTTATTGTAACTGG
TTTGTCGGGAAATATACGCACCCATATTTTTCCACCACGACGTGCATATCGTGTCATTGCTCTTCGTCCTCCTTCTATCTGTCTCACGGTGATCCAAGCG
GGTTCAAGTACTTGAAGAGCATATCTACCAAAACAAATATGATTGCCTTGGTAGGATTTTCCATTCATTCTTCCTCTATGTTGTTTACGAAATCTAGTTC
TTTTGGGGTTATACATAGCAATTATATTAAAAGATTTATTAATTTTCATTAAATCTTATAGAAAGAGGGATACTTTCTTCTTTTTTTAGGGATTTTTGGA
AAAACAAGGTTCTTGTCTTTTTTATTCTATCACTGGGCGGAATGGGAAGACATGGTTAGTTATTCTTCTTCTACGAATATCCAAATTTTGACACCTAATA
CTCCATAGATAGTTCGAATTGGATAGCAGCAATAATCAATTTTAGCGCGAATTGTTTGCAGGGGTAGTCTACCCTTTTTGATGCATTCGGCATGTGCAAT
TTCTTTTCCTGCTAGACG