Detailed information on CNT30372997


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703316Arabidopsis thalianaQuercus lobata9.5222.4891.369forward
CNT3070208Arabidopsis thalianaQuercus suber822.7591.3858reverse complement
CNT30404033Arabidopsis thalianaBeta vulgaris9.6622.6588.5770forward
CNT30526655Arabidopsis thalianaPhaseolus vulgaris10.3434.5690.6775forward
CNT30158859Arabidopsis thalianaPistacia vera10.0725.4490.4173reverse complement
CNT30634223Arabidopsis thalianaCapsicum annuum8.6921.5888.8963reverse complement
CNT30563209Arabidopsis thalianaActinidia chinensis9.7921.1390.1471reverse complement
CNT3084405Arabidopsis thalianaVigna radiata10.0724.2587.6773forward
CNT30544072Arabidopsis thalianaBrassica napus40.6997.6891.19295forward
CNT30237764Arabidopsis thalianaBrassica oleracea41.198.3590.6298forward
CNT30313675Arabidopsis thalianaCamelina sativa40.8310092.23296reverse complement
CNT3059454Arabidopsis thalianaArabidopsis lyrata41.2498.6896.99299forward
CNT3081558Arabidopsis thalianaBrassica juncea40.8336.9590.54296reverse complement
CNT30264180Arabidopsis thalianaBrassica rapa40.6997.6890.85295forward
CNT30647270Arabidopsis thalianaRosa chinensis9.2421.8294.0367forward
CNT30714905Arabidopsis thalianaMalus domestica golden9.2422.1994.0367forward
CNT30477933Arabidopsis thalianaArabidopsis halleri41.2498.6895.65299forward
CNT30154450Arabidopsis thalianaPrunus persica10.3424.5986.6775forward
CNT30409088Arabidopsis thalianaPapaver somniferum9.6621.4191.4370reverse complement
CNT30644693Arabidopsis thalianaCannabis sativa9.6621.6792.8670forward
CNT3029804Arabidopsis thalianaTheobroma cacao8.6920.5290.4863forward
CNT3058191Arabidopsis thalianaAmborella trichopoda9.6622.89070forward
CNT3024632Arabidopsis thalianaPopulus trichocarpa10.3424.7589.3375forward
CNT30318775Arabidopsis thalianaAsparagus officinalis14.0720.9485.29102reverse complement
CNT30726065Arabidopsis thalianaLupinus angustifolius8.6920.4593.6563forward

Expression of CNT30372997

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MCSTKCGIWEAQTCILSHIGYIPQNVLLYI*

>peptide 2 (41 aa)
MWDLGSPNLYFVPHRLHTSKCFTLYMKLNQYLYVELSNVGL*

>peptide 3 (50 aa)
MREAGFTEQRSPPALSSGRITARRHSDSPWPAGSFPAGPPIFYFLFDNCIY

Sequence

>CNT30372997
TAACACACAAACAAGTACAGATTCAATTAGAACACACACCAAAATTTGATATGTACGATGCTATATAATATACGTATCTAGCTTCTAATTCCCAAACAAA
CAAATGTCAAGCTCCTGATATGACTTCAACAGAGAAACCCTGATTTGAAAAAAAAAATCCATAGCAGAGCAAAAAAAAACCACACCTTTCCACATTCGCT
AAAATGGCAAAGAGCCCAGACGATGTTTTTACCTGAAATGTGGGATCTGGGAAGCTAATCAACGAAGAGACTCTTTATATATGTGTTCCACCAAATGTGG
GATCTGGGAAGCCCAAACTTGTATTTTGTCCCACATCGGTTACATACCTCAAAATGTTTTACTTTATATATGAAATTAAATCAATACTTGTACGTCGAGC
TCAGTAACGTGGGCTTGTGACCCGTGTGGGGACAATAAGTTGGTGGAACACTGGCTCGGCCCACGGGTCGGATCTGTTGTGGCATTGTTCCGGGCTGCCC
AGTCCAAGCTGAGAGTGATCCGTGTGTGTTAAGCGAAGGCTTGGCTCAGGCGGTTCTTGCAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCAGCG
ATCACCTCCCGCTCTCAGCAGTGGACGGATCACAGCTCGACGCCACTCAGATTCACCATGGCCTGCTGGCTCGTTCCCAGCTGGACCACCAATTTTTTAT
TTTCTTTTTGACAATTGTATTTATG