| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30547443 | Trifolium pratense | Ipomoea triloba | 25.83 | 21.67 | 87.18 | 78 | reverse complement |
| CNT30373911 | Trifolium pratense | Arabidopsis thaliana | 49.67 | 50.17 | 82.67 | 150 | reverse complement |
| CNT30526756 | Trifolium pratense | Phaseolus vulgaris | 41.06 | 40.79 | 91.94 | 124 | forward |
| CNT30711188 | Trifolium pratense | Glycine max | 40.73 | 40.46 | 92.68 | 123 | forward |
| CNT3094411 | Trifolium pratense | Solanum tuberosum | 21.52 | 21.81 | 87.69 | 65 | reverse complement |
| CNT30538642 | Trifolium pratense | Brassica napus | 39.74 | 51.06 | 85 | 120 | forward |
| CNT30235726 | Trifolium pratense | Brassica oleracea | 49.67 | 49.02 | 84.67 | 150 | forward |
| CNT3081558 | Trifolium pratense | Brassica juncea | 20.53 | 7.74 | 90.32 | 62 | reverse complement |
| CNT30261746 | Trifolium pratense | Brassica rapa | 39.74 | 51.06 | 85 | 120 | forward |
| CNT30612441 | Trifolium pratense | Arabis alpina | 36.75 | 36.04 | 89.19 | 111 | reverse complement |
| CNT3053206 | Trifolium pratense | Amborella trichopoda | 20.2 | 19.93 | 90.16 | 61 | forward |
| CNT30175002 | Trifolium pratense | Vigna angularis | 46.69 | 47.16 | 85.82 | 141 | forward |
>CNT30172426
GCTGAGTTAGGTAACTTCAACTTGTAACCCAAGTGGGGACATTAATTCGATGGAACACAGCTTTGGCTTGTCAAGTTGGTCCGGAGGGTGCACCTTGTTG
GCCTGCCCACTCCAAGTTGAGAGTTGAGTCATGGGACTTGAGCGAAGGCTGAGGTCTCCTGGCTCTTAGACTGGAGGACACTGCGTGAGGCTGGTTTCAC
AGAGCAGCGAACACCTCCTTCTCTTAACAGTGGGGGGATCACGGGCCACAACATTCCCGGTCTAAAAAGCTTGGTGAGCCAAGCCATTGAACCATCGTTT
TT