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Detailed information on CNT30313675


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Camelina sativaCorylus avellana22.6418.9389.5567forward
CNT30547369Camelina sativaIpomoea triloba24.669.8386.373reverse complement
CNT30372997Camelina sativaArabidopsis thaliana10040.8392.23296reverse complement
CNT30618136Camelina sativaSesamum indicum22.6411.7889.5567forward
CNT30379183Camelina sativaManihot esculenta23.992590.1471forward
CNT30404033Camelina sativaBeta vulgaris22.9722.0186.7668reverse complement
CNT30526596Camelina sativaPhaseolus vulgaris25.6825.0888.1676reverse complement
CNT30711674Camelina sativaGlycine max24.6624.0189.0473reverse complement
CNT30561829Camelina sativaActinidia chinensis22.6418.7792.5467reverse complement
CNT30538923Camelina sativaBrassica napus97.6495.3887.2289reverse complement
CNT30237764Camelina sativaBrassica oleracea97.6495.3887.2289reverse complement
CNT30510922Camelina sativaSolanum lycopersicum20.2719.6788.3360forward
CNT3059454Camelina sativaArabidopsis lyrata10097.6992.57296reverse complement
CNT3081558Camelina sativaBrassica juncea99.6636.8389.49295forward
CNT30262244Camelina sativaBrassica rapa98.6596.3786.99292reverse complement
CNT30232760Camelina sativaAnanas comosus22.9714.9188.2468reverse complement
CNT30647270Camelina sativaRosa chinensis22.6421.8291.0467reverse complement
CNT30714946Camelina sativaMalus domestica golden22.6411.5392.5467forward
CNT30477933Camelina sativaArabidopsis halleri10097.6992.57296reverse complement
CNT30409088Camelina sativaPapaver somniferum23.6521.4188.5770forward
CNT30572342Camelina sativaVitis vinifera22.311.8589.3966forward
CNT30644641Camelina sativaCannabis sativa22.9718.2892.6568reverse complement
CNT3029804Camelina sativaTheobroma cacao21.2820.5288.8963reverse complement
CNT3058749Camelina sativaAmborella trichopoda19.2620.8892.9857reverse complement
CNT3026903Camelina sativaPopulus trichocarpa22.9722.3789.7168reverse complement
CNT30318775Camelina sativaAsparagus officinalis20.2712.3288.3360forward
CNT30724433Camelina sativaLupinus angustifolius24.6624.0190.4173reverse complement

Expression of CNT30313675

Peptides detected in this lncRNA

>peptide 1 (96 aa)
GGSAGNEPAGHGEFEWRRAVIRPLLRAEGNRCSVKPASRIALQLQEPSEPGLRSTHTDHSQLGLGSSEQCLNRSDPWTEPVFHQLIIPTWVTSTRY*

>peptide 2 (29 aa)
MPQQIRPVDRASVPPTYYPHLGNKHSLLSS

Sequence

>CNT30313675
GGTGGTTCAGCTGGGAACGAGCCAGCAGGCCATGGTGAATTTGAGTGGCGTCGAGCTGTGATCCGTCCACTGCTGAGAGCGGAAGGTAATCGCTGCTCTG
TGAAACCAGCCTCACGCATTGCCCTCCAACTTCAGGAACCATCTGAGCCAGGCCTTCGCTCAACTCACACAGATCACTCACAGCTTGGACTGGGCAGCTC
GGAACAATGCCTCAACAGATCCGACCCGTGGACCGAGCCAGTGTTCCACCAACTTATTATCCCCACTTGGGTAACAAGCACTCGTTACTGAGCTCG