Detailed information on CNT30647270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372997Rosa chinensisArabidopsis thaliana21.829.2494.0367forward
CNT30406606Rosa chinensisBeta vulgaris37.1336.8986.84114forward
CNT30506770Rosa chinensisNicotiana attenuata20.220.3391.9462forward
CNT3096133Rosa chinensisSolanum tuberosum29.3229.787.7890forward
CNT30544072Rosa chinensisBrassica napus27.0427.4895.1883forward
CNT30238127Rosa chinensisBrassica oleracea26.7126.8995.1282forward
CNT30508652Rosa chinensisSolanum lycopersicum29.3229.6186.6790forward
CNT30143579Rosa chinensisMedicago truncatula22.823.188.5770forward
CNT30313675Rosa chinensisCamelina sativa21.8222.6491.0467reverse complement
CNT3059454Rosa chinensisArabidopsis lyrata21.8222.1194.0367forward
CNT3081558Rosa chinensisBrassica juncea25.739.8694.9479reverse complement
CNT30262244Rosa chinensisBrassica rapa27.0427.3995.1883forward
CNT30215606Rosa chinensisHelianthus annuus43.3243.6184.96133forward
CNT30477933Rosa chinensisArabidopsis halleri21.8222.1194.0367forward
CNT30154450Rosa chinensisPrunus persica48.8649.1890.67150forward
CNT30409088Rosa chinensisPapaver somniferum24.7623.2488.1676reverse complement
CNT30725324Rosa chinensisLupinus angustifolius17.5926.8796.354forward

Expression of CNT30647270

Peptides detected in this lncRNA

>peptide 1 (92 aa)
RAWSRQLMTQVGARGCWDFGSALAGWVQNGYILTRPFQAKSWAMWLGRRLWASWFLKRRAMREAGFTEQRSPPSLCSGRITCRCLLHPTMTR*

>peptide 2 (62 aa)
PSLVTPAYDPSGGTGVLGLWFSISWLGSEWLYSDSPVPSKELGYVAWAKALGFMVPKEEGNA*

Sequence

>CNT30647270
GCCGAGCTTGGTCACGCCAGCTTATGACCCAAGTGGGGGCACGGGGGTGTTGGGACTTTGGTTCAGCATTAGCTGGTTGGGTTCAGAATGGCTATATTCT
GACTCGCCCGTTCCAAGCAAAGAGTTGGGCTATGTGGCTTGGGCGAAGGCTCTGGGCTTCATGGTTCCTAAAGAGGAGGGCAATGCGTGAGGCTGGTTTC
ACAGAGCAGCGATCACCTCCCTCTCTTTGCAGTGGAAGGATAACGTGTCGGTGCCTTCTGCATCCCACCATGACCCGCTAGGCTGCTCCATTCGAACCAA
CACTTTT