Detailed information on CNT3029804


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Theobroma cacaoCorylus avellana44.9538.9884.78138reverse complement
CNT30698009Theobroma cacaoQuercus lobata47.8847.2785.03147reverse complement
CNT30372997Theobroma cacaoArabidopsis thaliana20.528.6990.4863forward
CNT30727740Theobroma cacaoCorchorus capsularis55.3755.9289.41170forward
CNT3070208Theobroma cacaoQuercus suber26.3831.7691.3681reverse complement
CNT30381728Theobroma cacaoManihot esculenta22.1522.0891.1868forward
CNT30406606Theobroma cacaoBeta vulgaris25.4125.2491.0378forward
CNT30526114Theobroma cacaoPhaseolus vulgaris48.2148.6883.11148forward
CNT30629861Theobroma cacaoVigna unguiculata36.8123.8485.84113forward
CNT30505537Theobroma cacaoNicotiana attenuata22.1522.2291.1868forward
CNT30708521Theobroma cacaoGlycine max30.9431.2586.3295forward
CNT30634223Theobroma cacaoCapsicum annuum26.3827.7487.6581reverse complement
CNT3095958Theobroma cacaoSolanum tuberosum26.0626.488.7580forward
CNT30561830Theobroma cacaoActinidia chinensis32.2532.4688.8999reverse complement
CNT3086859Theobroma cacaoVigna radiata30.6231.1388.394forward
CNT30541676Theobroma cacaoBrassica napus24.124.2690.5474forward
CNT30235726Theobroma cacaoBrassica oleracea24.124.1889.1974forward
CNT30510805Theobroma cacaoSolanum lycopersicum26.0626.2387.580forward
CNT30171787Theobroma cacaoTrifolium pratense23.1323.5188.7371forward
CNT30145967Theobroma cacaoMedicago truncatula20.8521.7789.0664forward
CNT30313675Theobroma cacaoCamelina sativa20.5221.2888.8963reverse complement
CNT3061108Theobroma cacaoArabidopsis lyrata22.1529.6991.1868reverse complement
CNT3081558Theobroma cacaoBrassica juncea25.739.8688.6179reverse complement
CNT30262244Theobroma cacaoBrassica rapa26.7127.0689.0282forward
CNT30612154Theobroma cacaoArabis alpina20.5220.7288.8963reverse complement
CNT30652801Theobroma cacaoRosa chinensis34.234.3189.52105forward
CNT30204138Theobroma cacaoHelianthus annuus28.6628.7686.3688forward
CNT30714975Theobroma cacaoMalus domestica golden19.8720.4791.861reverse complement
CNT30477933Theobroma cacaoArabidopsis halleri27.3627.7286.984forward
CNT30361740Theobroma cacaoSorghum bicolor22.822.9588.5770forward
CNT30410045Theobroma cacaoPapaver somniferum19.5420.279060reverse complement
CNT3058191Theobroma cacaoAmborella trichopoda20.220.291.9462forward
CNT3024632Theobroma cacaoPopulus trichocarpa27.0427.3990.3683forward

Expression of CNT3029804

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PSLVTQACHLSWGIMMMEHGFYRVCRIHCWYNSGLPAPSQELCRGT*

>peptide 2 (31 aa)
AELSNASLSPKLGHYDDGTRVLSSVSDPLLV*

Sequence

>CNT3029804
GCCGAGCTTAGTAACGCAAGCTTGTCACCTAAGTTGGGGCATTATGATGATGGAACACGGGTTCTATCGAGTGTGTCGGATCCACTGTTGGTATAATTCG
GGCCTGCCCGCTCCAAGCCAAGAGTTGTGCCGTGGGACCTGAGTGAAGACTCTGGGTCTCGTGGTTCCTAAAGTGGTGGGTACTGCGTGAGGCTGGTTTC
ACAGAGCAGCGAAGACCACCCGCTCTTAGCAGTGGAAGGATAACAGGCCTGCGCCACATGGATCCAATATGGCTCATTGGGTTGGCCCTGACTGGACCAT
CATCTTT