Detailed information on CNT30236426


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404033Brassica oleraceaBeta vulgaris24.4223.9586.4974forward
CNT3046253Brassica oleraceaPrunus dulcis19.4727.789.8359reverse complement
CNT3088675Brassica oleraceaVigna radiata20.7922.5888.8963forward
CNT30542892Brassica oleraceaBrassica napus10010097.03303forward
CNT3081558Brassica oleraceaBrassica juncea99.0137.4590.67300reverse complement
CNT30262244Brassica oleraceaBrassica rapa10010094.72303forward
CNT30204138Brassica oleraceaHelianthus annuus27.0626.885.3782forward
CNT30715507Brassica oleraceaMalus domestica golden28.0527.5190.5985forward

Expression of CNT30236426

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SSSVTSACNPCEDDKLVEHWLGQRVGFDVALFWAAQSKLRVVRVC*

Sequence

>CNT30236426
GTCGAGCTCAGTAACGAGTGCTTGTAACCCATGTGAGGATGATAAGTTGGTAGAACACTGGCTCGGCCAACGGGTCGGATTTGATGTGGCACTGTTCTGG
GCTGCCCAATCCAAGCTGAGAGTGGTCCGTGTGTGTTGAGCGAAAGCTTGGCGCAGACGGTTCCTAAAGTGGAGGGCAATGCGTTAGGCTGGTTTCACAG
AGCAGCGATCACCTCCCTCTCTCAGTAGTGGATGGATAACGACTCAACGCCATTCATATCCATCATCGCCTGCTGGCTCGTATCCGGCTGAACCACCAAC
TTT