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Detailed information on CNT30644641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Cannabis sativaOryza sativa22.5826.0989.2984reverse complement
CNT30316252Cannabis sativaCorylus avellana25.2726.5592.5594reverse complement
CNT30515285Cannabis sativaJuglans regia42.220.7485.99157forward
CNT30700605Cannabis sativaQuercus lobata41.430.6885.06154reverse complement
CNT30376145Cannabis sativaArabidopsis thaliana18.2822.1591.1868forward
CNT30616204Cannabis sativaSesamum indicum23.3920.8688.5187forward
CNT30505537Cannabis sativaNicotiana attenuata24.7330.0790.2292forward
CNT30711674Cannabis sativaGlycine max20.432594.7476forward
CNT3096457Cannabis sativaSolanum tuberosum19.0923.2891.5571forward
CNT30544072Cannabis sativaBrassica napus21.7726.8292.5981forward
CNT30235645Cannabis sativaBrassica oleracea19.0923.1392.9671forward
CNT30509597Cannabis sativaSolanum lycopersicum16.9421.893.6563reverse complement
CNT30172987Cannabis sativaTrifolium pratense18.552389.8669forward
CNT30313675Cannabis sativaCamelina sativa18.2822.9792.6568reverse complement
CNT3081558Cannabis sativaBrassica juncea21.7710.1190.1281reverse complement
CNT30264180Cannabis sativaBrassica rapa21.7726.8292.5981forward
CNT3015222Cannabis sativaZea mays22.0427.787.882forward
CNT30652801Cannabis sativaRosa chinensis27.9633.9990.38104forward
CNT30215606Cannabis sativaHelianthus annuus38.1746.5685.21142forward
CNT30714783Cannabis sativaMalus domestica golden39.7848.6884.46148forward
CNT30479039Cannabis sativaArabidopsis halleri22.5827.4590.4884forward
CNT30154450Cannabis sativaPrunus persica27.4233.4488.24102forward
CNT3058191Cannabis sativaAmborella trichopoda20.4324.7693.4276forward
CNT3026903Cannabis sativaPopulus trichocarpa27.6933.8891.26103forward
CNT30103689Cannabis sativaOryza rufipogon22.3121.2889.1683forward
CNT30117631Cannabis sativaOryza nivara22.5826.0189.2984forward
CNT30724440Cannabis sativaLupinus angustifolius22.3127.3990.3683forward

Expression of CNT30644641

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MREAGFTEQRIPPALGSGRITGRCYLGPPWFTGPTLIGPFLFLFFSFLF

Sequence

>CNT30644641
TGAAAGCTGAGTAGTATATAATAGCTTAGAAAACAACATTGCTCGCCGGGCCTAGTAGCGTGGGTCTGTAATCCAAGTGGAGGCATGTGGGAAATGGGAC
ATTAGGTTGGTTCAGTGGGCTGGATTCAGTGTTAGCTGTTTACTGGCCTGCCCGTTCCAAGCTGGGAGTTGGGCCTTGTGGTTTGGACGAAAGTCTGGCC
CACTGGGCTCCTAGAGTGGAGGGTAATGCGTGAGGCTGGTTTCACAGAGCAGCGAATACCTCCCGCTCTCGGCAGTGGAAGGATAACGGGCCGGTGCTAC
CTGGGTCCACCATGGTTCACTGGGCCGACCTTAATAGGACCATTTCTTTTTTTATTTTTCTCTTTTTTATTT