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Detailed information on CNT3058191


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698009Amborella trichopodaQuercus lobata26.7126.3789.0282reverse complement
CNT30372997Amborella trichopodaArabidopsis thaliana22.89.669070forward
CNT30618209Amborella trichopodaSesamum indicum22.4810.9989.8669reverse complement
CNT30525537Amborella trichopodaPhaseolus vulgaris20.5220.6690.4863forward
CNT30506770Amborella trichopodaNicotiana attenuata19.872088.5261forward
CNT30711674Amborella trichopodaGlycine max25.0825.3389.6177forward
CNT3046251Amborella trichopodaPrunus dulcis25.0825.5888.3177forward
CNT30634223Amborella trichopodaCapsicum annuum22.823.9787.1470reverse complement
CNT3096457Amborella trichopodaSolanum tuberosum23.7823.9386.373forward
CNT30541676Amborella trichopodaBrassica napus25.4125.5789.7478forward
CNT30235726Amborella trichopodaBrassica oleracea23.7823.8689.0473forward
CNT30509042Amborella trichopodaSolanum lycopersicum23.7823.8689.0473forward
CNT30172505Amborella trichopodaTrifolium pratense18.5727.0189.4757forward
CNT3059454Amborella trichopodaArabidopsis lyrata22.823.19070forward
CNT3081558Amborella trichopodaBrassica juncea22.88.7488.5770reverse complement
CNT30261746Amborella trichopodaBrassica rapa25.0832.7789.6177forward
CNT30612154Amborella trichopodaArabis alpina24.762590.7976reverse complement
CNT30597892Amborella trichopodaFraxinus excelsior25.7325.986.0879reverse complement
CNT30652801Amborella trichopodaRosa chinensis25.0825.1690.9177forward
CNT30714975Amborella trichopodaMalus domestica golden28.0128.8686.0586reverse complement
CNT30477933Amborella trichopodaArabidopsis halleri22.823.19070forward
CNT30154450Amborella trichopodaPrunus persica25.0825.2589.6177forward
CNT30706625Amborella trichopodaPrunus avium24.763.9790.7976forward
CNT30644641Amborella trichopodaCannabis sativa24.7620.4393.4276forward
CNT3029804Amborella trichopodaTheobroma cacao20.220.291.9462forward
CNT3026410Amborella trichopodaPopulus trichocarpa24.762592.1176forward
CNT30724440Amborella trichopodaLupinus angustifolius22.1522.4488.2468forward

Expression of CNT3058191

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MREAGLTEQRLPPALGSGRITCWCVGCPIEP*

>peptide 2 (29 aa)
MCPLQARSWPWLFLAERLGGPGFRVEENA*

Sequence

>CNT3058191
ACCGAGCTCGGTTGCGTGGGCTTGTAACTCAAGTGAGGGTAAGCAAGGTGGTTGAACTGTGACGTGGCTCTCTTGGGTGGGCGGTTTGCATTTGGGTTAA
TGTGCCCTCTCCAAGCCCGGAGTTGGCCTTGGCTCTTCTTGGCCGAAAGGTTGGGTGGGCCTGGATTTAGAGTGGAGGAGAATGCGTGAGGCTGGTCTCA
CAGAGCAGCGATTACCTCCCGCTCTTGGCAGTGGAAGGATAACATGTTGGTGTGTGGGCTGCCCAATTGAACCTTAGAGCTCCATGCTCGCATGGACAAC
CACTTTT